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LOC116128516 putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 4 [ Pistacia vera ]

Gene ID: 116128516, updated on 14-Dec-2023

Summary

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Gene symbol
LOC116128516
Gene description
putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 4
Gene type
protein coding
RefSeq status
MODEL
Organism
Pistacia vera
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Anacardiaceae; Pistacia
Annotation information
Annotation category: partial on reference assembly
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Genomic context

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See LOC116128516 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
1
Annotation release Status Assembly Chr Location
100 current PisVer_v2 (GCF_008641045.1) Unplaced Scaffold NW_022196003.1 (2034333..2035254, complement)

NW_022196003.1Genomic Context describing neighboring genes Neighboring gene UPF0481 protein At3g47200-like Neighboring gene UPF0481 protein At3g47200-like Neighboring gene cyclin-P3-1-like Neighboring gene uncharacterized LOC116128540

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_022196003 Unplaced Scaffold Reference PisVer_v2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in xylan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pistacia vera Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PisVer_v2 Primary Assembly

Genomic

  1. NW_022196003.1 Reference PisVer_v2 Primary Assembly

    Range
    2034333..2035254 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031414225.1 → XP_031270085.1  LOW QUALITY PROTEIN: putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 4

    Conserved Domains (1) summary
    cd02537
    Location:4 → 244
    GT8_Glycogenin; Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen
Nucleotide Protein
Heading Accession and Version

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