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LOC116120519 rhamnogalacturonan I rhamnosyltransferase 1 [ Pistacia vera ]

Gene ID: 116120519, updated on 14-Dec-2023

Summary

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Gene symbol
LOC116120519
Gene description
rhamnogalacturonan I rhamnosyltransferase 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Pistacia vera
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Anacardiaceae; Pistacia
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Genomic context

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See LOC116120519 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
100 current PisVer_v2 (GCF_008641045.1) Unplaced Scaffold NW_022196823.1 (1522133..1526932)

NW_022196823.1Genomic Context describing neighboring genes Neighboring gene integrin-linked protein kinase 1 Neighboring gene transmembrane emp24 domain-containing protein p24delta9-like Neighboring gene fructose-bisphosphate aldolase-lysine N-methyltransferase, chloroplastic Neighboring gene phosphate transporter PHO1 homolog 3-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_022196823 Unplaced Scaffold Reference PisVer_v2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in chloroplast IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
rhamnogalacturonan I rhamnosyltransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pistacia vera Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PisVer_v2 Primary Assembly

Genomic

  1. NW_022196823.1 Reference PisVer_v2 Primary Assembly

    Range
    1522133..1526932
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031406467.1 → XP_031262327.1  rhamnogalacturonan I rhamnosyltransferase 1

    Conserved Domains (1) summary
    cd11299
    Location:95 → 419
    O-FucT_plant; GDP-fucose protein O-fucosyltransferase, plant specific subfamily

RNA

  1. XR_004126567.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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