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LOC116113190 probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 11 [ Pistacia vera ]

Gene ID: 116113190, updated on 14-Dec-2023

Summary

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Gene symbol
LOC116113190
Gene description
probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 11
Gene type
protein coding
RefSeq status
MODEL
Organism
Pistacia vera
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Anacardiaceae; Pistacia
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Genomic context

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See LOC116113190 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
3
Annotation release Status Assembly Chr Location
100 current PisVer_v2 (GCF_008641045.1) Unplaced Scaffold NW_022196528.1 (101872..105110)

NW_022196528.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC116113189 Neighboring gene uncharacterized LOC116113206 Neighboring gene glutamate receptor 2.7-like Neighboring gene glutamate receptor 2.8-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_022196528 Unplaced Scaffold Reference PisVer_v2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables catalytic activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in trehalose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in trehalose metabolism in response to stress IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 11

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pistacia vera Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PisVer_v2 Primary Assembly

Genomic

  1. NW_022196528.1 Reference PisVer_v2 Primary Assembly

    Range
    101872..105110
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031399342.1 → XP_031255202.1  probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 11

    Conserved Domains (1) summary
    PLN02205
    Location:1 → 841
    PLN02205; alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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