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LOC116111363 callose synthase 12 [ Pistacia vera ]

Gene ID: 116111363, updated on 14-Dec-2023

Summary

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Gene symbol
LOC116111363
Gene description
callose synthase 12
Gene type
protein coding
RefSeq status
MODEL
Organism
Pistacia vera
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Anacardiaceae; Pistacia
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Genomic context

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See LOC116111363 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
2
Annotation release Status Assembly Chr Location
100 current PisVer_v2 (GCF_008641045.1) Unplaced Scaffold NW_022196481.1 (98822..106918, complement)

NW_022196481.1Genomic Context describing neighboring genes Neighboring gene major strawberry allergen Fra a 1-E-like Neighboring gene two pore calcium channel protein 1 Neighboring gene small nucleolar RNA J33 Neighboring gene putative cyclin-dependent serine/threonine-protein kinase DDB_G0272797/DDB_G0274007 Neighboring gene transfer RNA glutamic acid (anticodon CUC)

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_022196481 Unplaced Scaffold Reference PisVer_v2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 1,3-beta-D-glucan synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in (1->3)-beta-D-glucan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of 1,3-beta-D-glucan synthase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
callose synthase 12

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pistacia vera Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PisVer_v2 Primary Assembly

Genomic

  1. NW_022196481.1 Reference PisVer_v2 Primary Assembly

    Range
    98822..106918 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031397563.1 → XP_031253423.1  callose synthase 12

    Conserved Domains (2) summary
    pfam02364
    Location:867 → 1632
    Glucan_synthase; 1,3-beta-glucan synthase component
    pfam14288
    Location:155 → 268
    FKS1_dom1; 1,3-beta-glucan synthase subunit FKS1, domain-1
Nucleotide Protein
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