U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Atf6 activating transcription factor 6 [ Mastomys coucha (southern multimammate mouse) ]

Gene ID: 116103242, updated on 18-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
Atf6
Gene description
activating transcription factor 6
See related
EnsemblRapid:ENSMCUG00000006781
Gene type
protein coding
RefSeq status
MODEL
Organism
Mastomys coucha
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mastomys
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See Atf6 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
17
Annotation release Status Assembly Chr Location
100 current UCSF_Mcou_1 (GCF_008632895.1) Unplaced Scaffold NW_022196891.1 (67949614..68109423, complement)

NW_022196891.1Genomic Context describing neighboring genes Neighboring gene carboxyl-terminal PDZ ligand of neuronal nitric oxide synthase protein-like Neighboring gene spermatogenesis associated 46 Neighboring gene olfactomedin like 2B Neighboring gene uncharacterized LOC116103248 Neighboring gene U6 spliceosomal RNA Neighboring gene vomeronasal type-2 receptor 116-like Neighboring gene dual specificity phosphatase 12 Neighboring gene Fc receptor like B

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_022196891 Unplaced Scaffold Reference UCSF_Mcou_1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in endoplasmic reticulum unfolded protein response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
cyclic AMP-dependent transcription factor ATF-6 alpha

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Mastomys coucha Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCSF_Mcou_1 Primary Assembly

Genomic

  1. NW_022196891.1 Reference UCSF_Mcou_1 Primary Assembly

    Range
    67949614..68109423 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031388936.1 → XP_031244796.1  cyclic AMP-dependent transcription factor ATF-6 alpha isoform X2

    Conserved Domains (1) summary
    cd14700
    Location:296 → 347
    bZIP_ATF6; Basic leucine zipper (bZIP) domain of Activating Transcription Factor-6 (ATF-6) and similar proteins: a DNA-binding and dimerization domain

  2. XM_031388925.1 → XP_031244785.1  cyclic AMP-dependent transcription factor ATF-6 alpha isoform X1

    Conserved Domains (1) summary
    cd14700
    Location:296 → 347
    bZIP_ATF6; Basic leucine zipper (bZIP) domain of Activating Transcription Factor-6 (ATF-6) and similar proteins: a DNA-binding and dimerization domain

  3. XM_031388913.1 → XP_031244773.1  cyclic AMP-dependent transcription factor ATF-6 alpha isoform X1

    Related
    ENSMCUP00000007552.1, ENSMCUT00000009768.1
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.