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Nup43 nucleoporin 43 [ Mastomys coucha (southern multimammate mouse) ]

Gene ID: 116097737, updated on 18-Mar-2024

Summary

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Gene symbol
Nup43
Gene description
nucleoporin 43
See related
EnsemblRapid:ENSMCUG00000005479
Gene type
protein coding
RefSeq status
MODEL
Organism
Mastomys coucha
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mastomys
Orthologs
human mouse all
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Genomic context

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See Nup43 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
100 current UCSF_Mcou_1 (GCF_008632895.1) Unplaced Scaffold NW_022196902.1 (199704..210025)

NW_022196902.1Genomic Context describing neighboring genes Neighboring gene LDL receptor related protein 11 Neighboring gene protein-L-isoaspartate (D-aspartate) O-methyltransferase Neighboring gene translation initiation factor IF-2-like Neighboring gene 5S ribosomal RNA Neighboring gene U2 spliceosomal RNA Neighboring gene large tumor suppressor kinase 1 Neighboring gene katanin catalytic subunit A1 Neighboring gene armadillo repeat-containing protein 1-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_022196902 Unplaced Scaffold Reference UCSF_Mcou_1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of nuclear pore outer ring IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nucleoporin Nup43

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mastomys coucha Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCSF_Mcou_1 Primary Assembly

Genomic

  1. NW_022196902.1 Reference UCSF_Mcou_1 Primary Assembly

    Range
    199704..210025
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031380340.1 → XP_031236200.1  nucleoporin Nup43

    Related
    ENSMCUP00000006152.1, ENSMCUT00000007919.1
    Conserved Domains (2) summary
    sd00039
    Location:78 → 120
    7WD40; WD40 repeat [structural motif]
    cl29593
    Location:73 → 293
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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