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Nxf5 nuclear RNA export factor 5 [ Mastomys coucha (southern multimammate mouse) ]

Gene ID: 116094489, updated on 18-Mar-2024

Summary

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Gene symbol
Nxf5
Gene description
nuclear RNA export factor 5
See related
EnsemblRapid:ENSMCUG00000000969
Gene type
protein coding
RefSeq status
MODEL
Organism
Mastomys coucha
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mastomys
Orthologs
human all
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Genomic context

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See Nxf5 in Genome Data Viewer
Location:
chromosome: X
Exon count:
21
Annotation release Status Assembly Chr Location
100 current UCSF_Mcou_1 (GCF_008632895.1) X NC_045030.1 (128350617..128369718, complement)

Chromosome X - NC_045030.1Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene armadillo repeat containing X-linked 2 Neighboring gene zinc finger matrin-type 1 Neighboring gene melanoma antigen preferentially expressed in tumors-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_045030.1 Chromosome X Reference UCSF_Mcou_1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in poly(A)+ mRNA export from nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nuclear RNA export factor 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mastomys coucha Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCSF_Mcou_1 Primary Assembly

Genomic

  1. NC_045030.1 Reference UCSF_Mcou_1 Primary Assembly

    Range
    128350617..128369718 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031376223.1 → XP_031232083.1  nuclear RNA export factor 5

    Related
    ENSMCUP00000001022.1, ENSMCUT00000001324.1
    Conserved Domains (4) summary
    smart00804
    Location:541 → 602
    TAP_C; C-terminal domain of vertebrate Tap protein
    sd00035
    Location:230 → 272
    LRR_NTF; leucine-rich repeat [structural motif]
    pfam09162
    Location:122 → 204
    Tap-RNA_bind; Tap, RNA-binding
    cl09109
    Location:368 → 517
    NTF2_like; Nuclear transport factor 2 (NTF2-like) superfamily. This family includes members of the NTF2 family, Delta-5-3-ketosteroid isomerases, Scytalone Dehydratases, and the beta subunit of Ring hydroxylating dioxygenases. This family is a classic example of ...
Nucleotide Protein
Heading Accession and Version

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