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Ubqln4 ubiquilin 4 [ Mastomys coucha (southern multimammate mouse) ]

Gene ID: 116093134, updated on 18-Mar-2024

Summary

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Gene symbol
Ubqln4
Gene description
ubiquilin 4
See related
EnsemblRapid:ENSMCUG00000018599
Gene type
protein coding
RefSeq status
MODEL
Organism
Mastomys coucha
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mastomys
Orthologs
human mouse all
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Genomic context

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See Ubqln4 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
100 current UCSF_Mcou_1 (GCF_008632895.1) Unplaced Scaffold NW_022196898.1 (37482441..37498781)

NW_022196898.1Genomic Context describing neighboring genes Neighboring gene mex-3 RNA binding family member A Neighboring gene RAB25, member RAS oncogene family Neighboring gene late endosomal/lysosomal adaptor, MAPK and MTOR activator 2 Neighboring gene signal sequence receptor subunit 2 Neighboring gene uncharacterized LOC116093138 Neighboring gene Rho/Rac guanine nucleotide exchange factor 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_022196898 Unplaced Scaffold Reference UCSF_Mcou_1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables polyubiquitin modification-dependent protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ubiquilin-4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mastomys coucha Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCSF_Mcou_1 Primary Assembly

Genomic

  1. NW_022196898.1 Reference UCSF_Mcou_1 Primary Assembly

    Range
    37482441..37498781
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031374402.1 → XP_031230262.1  ubiquilin-4

    Related
    ENSMCUP00000021062.1, ENSMCUT00000027220.1
    Conserved Domains (4) summary
    cd14399
    Location:552 → 591
    UBA_PLICs; UBA domain of eukaryotic protein linking integrin-associated protein (IAP, also known as CD47) with cytoskeleton (PLIC) proteins
    TIGR00601
    Location:13 → 258
    rad23; UV excision repair protein Rad23
    cd01808
    Location:11 → 83
    Ubl_PLICs; ubiquitin-like (Ubl) domain found in eukaryotic protein linking integrin-associated protein (IAP, also known as CD47) with cytoskeleton (PLIC) proteins
    pfam17061
    Location:481 → 520
    PARM
Nucleotide Protein
Heading Accession and Version

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