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C9orf72 C9orf72-SMCR8 complex subunit [ Mastomys coucha (southern multimammate mouse) ]

Gene ID: 116087963, updated on 18-Mar-2024

Summary

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Gene symbol
C9orf72
Gene description
C9orf72-SMCR8 complex subunit
See related
EnsemblRapid:ENSMCUG00000009689
Gene type
protein coding
RefSeq status
MODEL
Organism
Mastomys coucha
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mastomys
Orthologs
human mouse all
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Genomic context

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See C9orf72 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
100 current UCSF_Mcou_1 (GCF_008632895.1) Unplaced Scaffold NW_022196896.1 (2560915..2592954)

NW_022196896.1Genomic Context describing neighboring genes Neighboring gene leucine rich repeat and Ig domain containing 2 Neighboring gene malate dehydrogenase, mitochondrial pseudogene Neighboring gene uncharacterized LOC116087962 Neighboring gene heterogeneous nuclear ribonucleoprotein A3 pseudogene Neighboring gene MOB kinase activator 3B Neighboring gene interferon kappa

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_022196896 Unplaced Scaffold Reference UCSF_Mcou_1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables guanyl-nucleotide exchange factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in autophagy IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in autophagosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
guanine nucleotide exchange C9orf72 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mastomys coucha Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCSF_Mcou_1 Primary Assembly

Genomic

  1. NW_022196896.1 Reference UCSF_Mcou_1 Primary Assembly

    Range
    2560915..2592954
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031366392.1 → XP_031222252.1  guanine nucleotide exchange C9orf72 homolog

    Related
    ENSMCUP00000010945.1, ENSMCUT00000014050.1

  2. XM_031366391.1 → XP_031222251.1  guanine nucleotide exchange C9orf72 homolog

    Related
    ENSMCUP00000010952.1, ENSMCUT00000014057.1
    Conserved Domains (1) summary
    pfam15019
    Location:61 → 324
    C9orf72-like; C9orf72-like protein family
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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