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Hcfc1 host cell factor C1 [ Mastomys coucha (southern multimammate mouse) ]

Gene ID: 116086101, updated on 18-Mar-2024

Summary

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Gene symbol
Hcfc1
Gene description
host cell factor C1
See related
EnsemblRapid:ENSMCUG00000000666
Gene type
protein coding
RefSeq status
MODEL
Organism
Mastomys coucha
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mastomys
Orthologs
human mouse all
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Genomic context

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See Hcfc1 in Genome Data Viewer
Location:
chromosome: X
Exon count:
26
Annotation release Status Assembly Chr Location
100 current UCSF_Mcou_1 (GCF_008632895.1) X NC_045030.1 (75700173..75725096, complement)

Chromosome X - NC_045030.1Genomic Context describing neighboring genes Neighboring gene renin binding protein Neighboring gene U1 spliceosomal RNA Neighboring gene 60S ribosomal protein L32 pseudogene Neighboring gene 60S ribosomal protein L26-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_045030.1 Chromosome X Reference UCSF_Mcou_1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription coactivator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin remodeling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of histone methyltransferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
host cell factor 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mastomys coucha Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCSF_Mcou_1 Primary Assembly

Genomic

  1. NC_045030.1 Reference UCSF_Mcou_1 Primary Assembly

    Range
    75700173..75725096 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031364359.1 → XP_031220219.1  host cell factor 1 isoform X4

    Conserved Domains (5) summary
    PLN02193
    Location:27 → 322
    PLN02193; nitrile-specifier protein
    cd00063
    Location:1867 → 1896
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    sd00038
    Location:200 → 253
    Kelch; KELCH repeat [structural motif]
    pfam05109
    Location:441 → 771
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    pfam13854
    Location:319 → 351
    Kelch_5; Kelch motif

  2. XM_031364350.1 → XP_031220210.1  host cell factor 1 isoform X3

  3. XM_031364340.1 → XP_031220200.1  host cell factor 1 isoform X2

    Conserved Domains (6) summary
    PLN02193
    Location:27 → 322
    PLN02193; nitrile-specifier protein
    PRK10263
    Location:1477 → 1651
    PRK10263; DNA translocase FtsK; Provisional
    cd00063
    Location:1911 → 1940
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    sd00038
    Location:200 → 253
    Kelch; KELCH repeat [structural motif]
    pfam05109
    Location:441 → 771
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    pfam13854
    Location:319 → 351
    Kelch_5; Kelch motif

  4. XM_031364330.1 → XP_031220190.1  host cell factor 1 isoform X1

    Related
    ENSMCUP00000000738.1, ENSMCUT00000000910.1
    Conserved Domains (6) summary
    PLN02193
    Location:27 → 322
    PLN02193; nitrile-specifier protein
    PRK10263
    Location:1477 → 1651
    PRK10263; DNA translocase FtsK; Provisional
    cd00063
    Location:1912 → 1941
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    sd00038
    Location:200 → 253
    Kelch; KELCH repeat [structural motif]
    pfam05109
    Location:441 → 771
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    pfam13854
    Location:319 → 351
    Kelch_5; Kelch motif
Nucleotide Protein
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