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Sgcg sarcoglycan gamma [ Mastomys coucha (southern multimammate mouse) ]

Gene ID: 116084990, updated on 18-Mar-2024

Summary

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Gene symbol
Sgcg
Gene description
sarcoglycan gamma
See related
EnsemblRapid:ENSMCUG00000008462
Gene type
protein coding
RefSeq status
MODEL
Organism
Mastomys coucha
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mastomys
Orthologs
human mouse all
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Genomic context

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See Sgcg in Genome Data Viewer
Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
100 current UCSF_Mcou_1 (GCF_008632895.1) Unplaced Scaffold NW_022196915.1 (47740053..47799207, complement)

NW_022196915.1Genomic Context describing neighboring genes Neighboring gene TNF receptor superfamily member 19 Neighboring gene sacsin molecular chaperone Neighboring gene U6 spliceosomal RNA Neighboring gene eukaryotic translation initiation factor 3 subunit E pseudogene Neighboring gene uncharacterized LOC116084716

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_022196915 Unplaced Scaffold Reference UCSF_Mcou_1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cardiac muscle tissue development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
gamma-sarcoglycan

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mastomys coucha Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCSF_Mcou_1 Primary Assembly

Genomic

  1. NW_022196915.1 Reference UCSF_Mcou_1 Primary Assembly

    Range
    47740053..47799207 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031362363.1 → XP_031218223.1  gamma-sarcoglycan isoform X4

    Conserved Domains (1) summary
    pfam04790
    Location:25 → 233
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  2. XM_031362361.1 → XP_031218221.1  gamma-sarcoglycan isoform X2

    Related
    ENSMCUP00000009610.1, ENSMCUT00000012243.1
    Conserved Domains (1) summary
    pfam04790
    Location:25 → 278
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  3. XM_031362362.1 → XP_031218222.1  gamma-sarcoglycan isoform X3

  4. XM_031362359.1 → XP_031218219.1  gamma-sarcoglycan isoform X1

    Related
    ENSMCUP00000009611.1, ENSMCUT00000012249.1
    Conserved Domains (1) summary
    pfam04790
    Location:25 → 233
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  5. XM_031362360.1 → XP_031218220.1  gamma-sarcoglycan isoform X1

    Conserved Domains (1) summary
    pfam04790
    Location:25 → 233
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  6. XM_031362355.1 → XP_031218215.1  gamma-sarcoglycan isoform X1

    Conserved Domains (1) summary
    pfam04790
    Location:25 → 233
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  7. XM_031362358.1 → XP_031218218.1  gamma-sarcoglycan isoform X1

    Conserved Domains (1) summary
    pfam04790
    Location:25 → 233
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  8. XM_031362356.1 → XP_031218216.1  gamma-sarcoglycan isoform X1

    Conserved Domains (1) summary
    pfam04790
    Location:25 → 233
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  9. XM_031362357.1 → XP_031218217.1  gamma-sarcoglycan isoform X1

Nucleotide Protein
Heading Accession and Version

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