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Derl1 derlin 1 [ Mastomys coucha (southern multimammate mouse) ]

Gene ID: 116081723, updated on 18-Mar-2024

Summary

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Gene symbol
Derl1
Gene description
derlin 1
See related
EnsemblRapid:ENSMCUG00000010397
Gene type
protein coding
RefSeq status
MODEL
Organism
Mastomys coucha
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mastomys
Orthologs
human mouse all
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Genomic context

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See Derl1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
100 current UCSF_Mcou_1 (GCF_008632895.1) Unplaced Scaffold NW_022196913.1 (96040285..96063566, complement)

NW_022196913.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC116081830 Neighboring gene uncharacterized LOC116081829 Neighboring gene pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 pseudogene Neighboring gene TBC1 domain family member 31 Neighboring gene uncharacterized LOC116081445

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_022196913 Unplaced Scaffold Reference UCSF_Mcou_1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables misfolded protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin-specific protease binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in endoplasmic reticulum unfolded protein response IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Hrd1p ubiquitin ligase ERAD-L complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
derlin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mastomys coucha Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCSF_Mcou_1 Primary Assembly

Genomic

  1. NW_022196913.1 Reference UCSF_Mcou_1 Primary Assembly

    Range
    96040285..96063566 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031358365.1 → XP_031214225.1  derlin-1

    Related
    ENSMCUP00000011680.1, ENSMCUT00000015088.1
    Conserved Domains (1) summary
    pfam04511
    Location:11 → 204
    DER1; Der1-like family
Nucleotide Protein
Heading Accession and Version

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