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Kirrel3 kirre like nephrin family adhesion molecule 3 [ Mastomys coucha (southern multimammate mouse) ]

Gene ID: 116072605, updated on 18-Mar-2024

Summary

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Gene symbol
Kirrel3
Gene description
kirre like nephrin family adhesion molecule 3
See related
EnsemblRapid:ENSMCUG00000021838
Gene type
protein coding
RefSeq status
MODEL
Organism
Mastomys coucha
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mastomys
Orthologs
human mouse all
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Genomic context

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See Kirrel3 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
18
Annotation release Status Assembly Chr Location
100 current UCSF_Mcou_1 (GCF_008632895.1) Unplaced Scaffold NW_022196906.1 (28455498..29009147)

NW_022196906.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC116073567 Neighboring gene uncharacterized LOC116073596 Neighboring gene small nucleolar RNA SNORA17 Neighboring gene uncharacterized LOC116072607 Neighboring gene small nucleolar RNA SNORA48 Neighboring gene ST3 beta-galactoside alpha-2,3-sialyltransferase 4 Neighboring gene decapping enzyme, scavenger

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_022196906 Unplaced Scaffold Reference UCSF_Mcou_1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell adhesion molecule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in synapse assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell-cell junction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
kin of IRRE-like protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mastomys coucha Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCSF_Mcou_1 Primary Assembly

Genomic

  1. NW_022196906.1 Reference UCSF_Mcou_1 Primary Assembly

    Range
    28455498..29009147
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031344058.1 → XP_031199918.1  kin of IRRE-like protein 3 isoform X1

    Related
    ENSMCUP00000024884.1, ENSMCUT00000031941.1
    Conserved Domains (3) summary
    cd05759
    Location:165 → 246
    Ig2_KIRREL3-like; Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)
    cd05898
    Location:418 → 515
    Ig5_KIRREL3; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)
    cl11960
    Location:335 → 416
    Ig; Immunoglobulin domain

  2. XM_031344060.1 → XP_031199920.1  kin of IRRE-like protein 3 isoform X3

    Conserved Domains (3) summary
    cd05759
    Location:165 → 246
    Ig2_KIRREL3-like; Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)
    cd05898
    Location:418 → 515
    Ig5_KIRREL3; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)
    cl11960
    Location:335 → 416
    Ig; Immunoglobulin domain

  3. XM_031344059.1 → XP_031199919.1  kin of IRRE-like protein 3 isoform X2

    Conserved Domains (3) summary
    cd05759
    Location:165 → 246
    Ig2_KIRREL3-like; Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)
    cd05898
    Location:418 → 515
    Ig5_KIRREL3; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)
    cl11960
    Location:335 → 416
    Ig; Immunoglobulin domain

  4. XM_031344062.1 → XP_031199922.1  kin of IRRE-like protein 3 isoform X5

    Related
    ENSMCUP00000024893.1, ENSMCUT00000031950.1

  5. XM_031344061.1 → XP_031199921.1  kin of IRRE-like protein 3 isoform X4

    Related
    ENSMCUP00000024870.1, ENSMCUT00000031927.1
    Conserved Domains (4) summary
    cd05759
    Location:132 → 213
    Ig2_KIRREL3-like; Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)
    cd05898
    Location:385 → 482
    Ig5_KIRREL3; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)
    smart00410
    Location:21 → 110
    IG_like; Immunoglobulin like
    cl11960
    Location:302 → 383
    Ig; Immunoglobulin domain
Nucleotide Protein
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