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lman2lb lectin, mannose-binding 2-like b [ Sander lucioperca (pikeperch) ]

Gene ID: 116065633, updated on 21-Aug-2024

Summary

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Gene symbol
lman2lb
Gene description
lectin, mannose-binding 2-like b
See related
EnsemblRapid:ENSSLUG00000006131
Gene type
protein coding
RefSeq status
MODEL
Organism
Sander lucioperca
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Percoidei; Percidae; Luciopercinae; Sander
Orthologs
zebrafish all
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Genomic context

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See lman2lb in Genome Data Viewer
Location:
chromosome: 2
Exon count:
9
Annotation release Status Assembly Chr Location
101 current SLUC_FBN_1.2 (GCF_008315115.2) 2 NC_050174.1 (28313519..28321098, complement)
100 previous assembly SLUC_FBN_1 (GCF_008315115.1) Unplaced Scaffold NW_022173042.1 (67675..75257)

Chromosome 2 - NC_050174.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC116065637 Neighboring gene NMDA receptor synaptonuclear signaling and neuronal migration factor b Neighboring gene coiled-coil domain-containing protein 183 Neighboring gene leukocyte surface antigen CD53 Neighboring gene T-box transcription factor TBX3-like Neighboring gene uncharacterized LOC116065638

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables D-mannose binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in Golgi organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endoplasmic reticulum organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in COPII-coated ER to Golgi transport vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum-Golgi intermediate compartment IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
lectin, mannose-binding 2-like b
Names
VIP36-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sander lucioperca Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SLUC_FBN_1.2 Primary Assembly

Genomic

  1. NC_050174.1 Reference SLUC_FBN_1.2 Primary Assembly

    Range
    28313519..28321098 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031321172.2 → XP_031177032.1  lectin, mannose-binding 2-like b

    UniProtKB/TrEMBL
    A0A8C9XT50
    Related
    ENSSLUP00000012934.1, ENSSLUT00000013371.2
    Conserved Domains (1) summary
    cl14058
    Location:54 → 303
    lectin_L-type; legume lectins

RNA

  1. XR_004895980.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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