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ndst1a N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1a [ Sander lucioperca (pikeperch) ]

Gene ID: 116064308, updated on 21-Aug-2024

Summary

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Gene symbol
ndst1a
Gene description
N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1a
See related
EnsemblRapid:ENSSLUG00000011819
Gene type
protein coding
RefSeq status
MODEL
Organism
Sander lucioperca
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Percoidei; Percidae; Luciopercinae; Sander
Also known as
ndst1
Orthologs
zebrafish all
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Genomic context

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See ndst1a in Genome Data Viewer
Location:
chromosome: 1
Exon count:
17
Annotation release Status Assembly Chr Location
101 current SLUC_FBN_1.2 (GCF_008315115.2) 1 NC_050173.1 (34987188..35033152, complement)
100 previous assembly SLUC_FBN_1 (GCF_008315115.1) Unplaced Scaffold NW_022173012.1 (5776897..5822697)

Chromosome 1 - NC_050173.1Genomic Context describing neighboring genes Neighboring gene kinesin-like protein klp-20 Neighboring gene solute carrier family 35 member A4 Neighboring gene CD74 molecule, major histocompatibility complex, class II invariant chain a Neighboring gene myozenin-2 Neighboring gene RNA binding motif protein 22 Neighboring gene soluble guanylate cyclase 88E-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables [heparan sulfate]-glucosamine N-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables deacetylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 1a
Names
N-deacetylase and N-sulfotransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sander lucioperca Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SLUC_FBN_1.2 Primary Assembly

Genomic

  1. NC_050173.1 Reference SLUC_FBN_1.2 Primary Assembly

    Range
    34987188..35033152 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031319420.2 → XP_031175280.1  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 1a

    UniProtKB/TrEMBL
    A0A8C9YJ20, A0A8C9YK44
    Conserved Domains (2) summary
    pfam00685
    Location:612 → 862
    Sulfotransfer_1; Sulfotransferase domain
    pfam12062
    Location:28 → 522
    HSNSD; heparan sulfate-N-deacetylase

  2. XM_031319421.2 → XP_031175281.1  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 1a

    UniProtKB/TrEMBL
    A0A8C9YJ20, A0A8C9YK44
    Conserved Domains (2) summary
    pfam00685
    Location:612 → 862
    Sulfotransfer_1; Sulfotransferase domain
    pfam12062
    Location:28 → 522
    HSNSD; heparan sulfate-N-deacetylase

  3. XM_031319422.2 → XP_031175282.1  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 1a

    UniProtKB/TrEMBL
    A0A8C9YJ20, A0A8C9YK44
    Related
    ENSSLUP00000026004.1, ENSSLUT00000026861.2
Nucleotide Protein
Heading Accession and Version

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