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hs6st1a heparan sulfate 6-O-sulfotransferase 1a [ Sander lucioperca (pikeperch) ]

Gene ID: 116057390, updated on 21-Aug-2024

Summary

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Gene symbol
hs6st1a
Gene description
heparan sulfate 6-O-sulfotransferase 1a
See related
EnsemblRapid:ENSSLUG00000005585
Gene type
protein coding
RefSeq status
MODEL
Organism
Sander lucioperca
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Percoidei; Percidae; Luciopercinae; Sander
Orthologs
zebrafish all
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Genomic context

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See hs6st1a in Genome Data Viewer
Location:
chromosome: 18
Exon count:
5
Annotation release Status Assembly Chr Location
101 current SLUC_FBN_1.2 (GCF_008315115.2) 18 NC_050190.1 (21544033..21605463, complement)
100 previous assembly SLUC_FBN_1 (GCF_008315115.1) Unplaced Scaffold NW_022172879.1 (6235201..6296576)

Chromosome 18 - NC_050190.1Genomic Context describing neighboring genes Neighboring gene transcription factor Sp3-like Neighboring gene uncharacterized LOC116057463 Neighboring gene UDP-glucose glycoprotein glucosyltransferase 1 Neighboring gene uncharacterized LOC116057664 Neighboring gene otolith matrix protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables heparan sulfate 6-O-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in heparan sulfate proteoglycan biosynthetic process, enzymatic modification IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
heparan-sulfate 6-O-sulfotransferase 1-A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sander lucioperca Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SLUC_FBN_1.2 Primary Assembly

Genomic

  1. NC_050190.1 Reference SLUC_FBN_1.2 Primary Assembly

    Range
    21544033..21605463 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031309814.2 → XP_031165674.1  heparan-sulfate 6-O-sulfotransferase 1-A

    UniProtKB/TrEMBL
    A0A8C9XNQ7, A0A8C9XQ73
    Related
    ENSSLUP00000011770.2, ENSSLUT00000012175.2
    Conserved Domains (1) summary
    pfam03567
    Location:77 → 341
    Sulfotransfer_2; Sulfotransferase family

RNA

  1. XR_004895702.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases