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LOC116052891 kin of IRRE-like protein 3 [ Sander lucioperca (pikeperch) ]

Gene ID: 116052891, updated on 21-Aug-2024

Summary

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Gene symbol
LOC116052891
Gene description
kin of IRRE-like protein 3
See related
EnsemblRapid:ENSSLUG00000006585
Gene type
protein coding
RefSeq status
MODEL
Organism
Sander lucioperca
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Percoidei; Percidae; Luciopercinae; Sander
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Genomic context

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See LOC116052891 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
16
Annotation release Status Assembly Chr Location
101 current SLUC_FBN_1.2 (GCF_008315115.2) 13 NC_050185.1 (23911953..24280708, complement)
100 previous assembly SLUC_FBN_1 (GCF_008315115.1) Unplaced Scaffold NW_022172817.1 (841301..1011454, complement)

Chromosome 13 - NC_050185.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC116052882 Neighboring gene small fragment nuclease Neighboring gene uncharacterized LOC116052879 Neighboring gene uncharacterized LOC116052878 Neighboring gene uncharacterized LOC118492979 Neighboring gene uncharacterized LOC116034442 Neighboring gene uncharacterized LOC118492989 Neighboring gene schwannomin-interacting protein 1-like Neighboring gene protein FAM122A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell adhesion molecule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in synapse assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell-cell junction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
kin of IRRE-like protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sander lucioperca Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SLUC_FBN_1.2 Primary Assembly

Genomic

  1. NC_050185.1 Reference SLUC_FBN_1.2 Primary Assembly

    Range
    23911953..24280708 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035990803.1 → XP_035846696.1  kin of IRRE-like protein 3

    UniProtKB/TrEMBL
    A0A8C9XTU3
    Related
    ENSSLUP00000014042.2, ENSSLUT00000014505.2
    Conserved Domains (4) summary
    pfam13895
    Location:227 → 294
    Ig_2; Immunoglobulin domain
    cd00096
    Location:123 → 126
    Ig; Ig strand A [structural motif]
    cd05898
    Location:391 → 488
    IgI_5_KIRREL3; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein; member of the I-set of Ig superfamily (IgSF) domains
    cl11960
    Location:122 → 219
    Ig; Immunoglobulin domain
Nucleotide Protein
Heading Accession and Version

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