U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

ndst3 N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3 [ Sander lucioperca (pikeperch) ]

Gene ID: 116052242, updated on 21-Aug-2024

Summary

Go to the top of the page Help
Gene symbol
ndst3
Gene description
N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3
See related
EnsemblRapid:ENSSLUG00000014132
Gene type
protein coding
RefSeq status
MODEL
Organism
Sander lucioperca
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Percoidei; Percidae; Luciopercinae; Sander
Orthologs
zebrafish all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See ndst3 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
17
Annotation release Status Assembly Chr Location
101 current SLUC_FBN_1.2 (GCF_008315115.2) 4 NC_050176.1 (25407984..25459650)
100 previous assembly SLUC_FBN_1 (GCF_008315115.1) Unplaced Scaffold NW_022172811.1 (426932..478630)

Chromosome 4 - NC_050176.1Genomic Context describing neighboring genes Neighboring gene putative nuclease HARBI1 Neighboring gene UDP glycosyltransferase 8 Neighboring gene serine protease 12 Neighboring gene methyltransferase 14, N6-adenosine-methyltransferase non-catalytic subunit

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables [heparan sulfate]-glucosamine N-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables deacetylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 4

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Sander lucioperca Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SLUC_FBN_1.2 Primary Assembly

Genomic

  1. NC_050176.1 Reference SLUC_FBN_1.2 Primary Assembly

    Range
    25407984..25459650
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036000983.1 → XP_035856876.1  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 4 isoform X3

    UniProtKB/TrEMBL
    A0A8C9YZQ6
    Conserved Domains (2) summary
    pfam00685
    Location:599 → 795
    Sulfotransfer_1; Sulfotransferase domain
    pfam12062
    Location:31 → 510
    HSNSD; heparan sulfate-N-deacetylase

  2. XM_036000982.1 → XP_035856875.1  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 4 isoform X2

    UniProtKB/TrEMBL
    A0A8C9YZP5
    Related
    ENSSLUP00000031859.2, ENSSLUT00000032880.2
    Conserved Domains (2) summary
    pfam00685
    Location:599 → 850
    Sulfotransfer_1; Sulfotransferase domain
    pfam12062
    Location:31 → 510
    HSNSD; heparan sulfate-N-deacetylase

  3. XM_031302766.2 → XP_031158626.1  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 4 isoform X1

    UniProtKB/TrEMBL
    A0A8C9YXG4
    Conserved Domains (2) summary
    pfam00685
    Location:599 → 850
    Sulfotransfer_1; Sulfotransferase domain
    pfam12062
    Location:31 → 510
    HSNSD; heparan sulfate-N-deacetylase

  4. XM_031302764.2 → XP_031158624.1  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 4 isoform X1

    UniProtKB/TrEMBL
    A0A8C9YXG4
    Conserved Domains (2) summary
    pfam00685
    Location:599 → 850
    Sulfotransfer_1; Sulfotransferase domain
    pfam12062
    Location:31 → 510
    HSNSD; heparan sulfate-N-deacetylase

  5. XM_031302765.2 → XP_031158625.1  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 4 isoform X1

    UniProtKB/TrEMBL
    A0A8C9YXG4
    Conserved Domains (2) summary
    pfam00685
    Location:599 → 850
    Sulfotransfer_1; Sulfotransferase domain
    pfam12062
    Location:31 → 510
    HSNSD; heparan sulfate-N-deacetylase

  6. XM_031302763.2 → XP_031158623.1  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 4 isoform X1

    UniProtKB/TrEMBL
    A0A8C9YXG4
    Related
    ENSSLUP00000031810.1, ENSSLUT00000032829.2
    Conserved Domains (2) summary
    pfam00685
    Location:599 → 850
    Sulfotransfer_1; Sulfotransferase domain
    pfam12062
    Location:31 → 510
    HSNSD; heparan sulfate-N-deacetylase
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.