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galnt1 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 [ Sander lucioperca (pikeperch) ]

Gene ID: 116049471, updated on 21-Aug-2024

Summary

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Gene symbol
galnt1
Gene description
UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1
See related
EnsemblRapid:ENSSLUG00000000566
Gene type
protein coding
RefSeq status
MODEL
Organism
Sander lucioperca
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Percoidei; Percidae; Luciopercinae; Sander
Orthologs
human zebrafish all
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Genomic context

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See galnt1 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
15
Annotation release Status Assembly Chr Location
101 current SLUC_FBN_1.2 (GCF_008315115.2) 10 NC_050182.1 (27054562..27233749, complement)
100 previous assembly SLUC_FBN_1 (GCF_008315115.1) Unplaced Scaffold NW_022172779.1 (6245148..6291456)

Chromosome 10 - NC_050182.1Genomic Context describing neighboring genes Neighboring gene DOMON domain-containing protein FRRS1L Neighboring gene transmembrane protein 245 Neighboring gene SUN domain-containing protein 3-like Neighboring gene INO80 complex subunit C Neighboring gene transcriptional repressor scratch 1 Neighboring gene uncharacterized LOC116049464 Neighboring gene uncharacterized LOC116049465 Neighboring gene diacylglycerol O-acyltransferase 1b Neighboring gene G-protein coupled receptor 20-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polypeptide N-acetylgalactosaminyltransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sander lucioperca Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SLUC_FBN_1.2 Primary Assembly

Genomic

  1. NC_050182.1 Reference SLUC_FBN_1.2 Primary Assembly

    Range
    27054562..27233749 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036006171.1 → XP_035862064.1  polypeptide N-acetylgalactosaminyltransferase 1 isoform X2

    UniProtKB/TrEMBL
    A0A8D0CP53
    Conserved Domains (2) summary
    cd02510
    Location:117 → 417
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:430 → 565
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain

  2. XM_031299145.2 → XP_031155005.1  polypeptide N-acetylgalactosaminyltransferase 1 isoform X2

    UniProtKB/TrEMBL
    A0A8D0CP53
    Conserved Domains (2) summary
    cd02510
    Location:117 → 417
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:430 → 565
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain

  3. XM_031299144.2 → XP_031155004.1  polypeptide N-acetylgalactosaminyltransferase 1 isoform X2

    UniProtKB/TrEMBL
    A0A8D0CP53
    Related
    ENSSLUP00000001261.2, ENSSLUT00000001336.2
    Conserved Domains (2) summary
    cd02510
    Location:117 → 417
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:430 → 565
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain

  4. XM_031299143.2 → XP_031155003.2  polypeptide N-acetylgalactosaminyltransferase 1 isoform X1

    UniProtKB/TrEMBL
    A0A8C9WZQ9, A0A8D0CP53
    Related
    ENSSLUP00000001297.2, ENSSLUT00000001373.2
    Conserved Domains (2) summary
    cd02510
    Location:117 → 417
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:430 → 546
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain
Nucleotide Protein
Heading Accession and Version

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