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kirrel3b kirre like nephrin family adhesion molecule 3b [ Sander lucioperca (pikeperch) ]

Gene ID: 116043860, updated on 21-Aug-2024

Summary

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Gene symbol
kirrel3b
Gene description
kirre like nephrin family adhesion molecule 3b
See related
EnsemblRapid:ENSSLUG00000013160
Gene type
protein coding
RefSeq status
MODEL
Organism
Sander lucioperca
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Percoidei; Percidae; Luciopercinae; Sander
Also known as
kirrel3
Orthologs
zebrafish all
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Genomic context

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See kirrel3b in Genome Data Viewer
Location:
chromosome: 8
Exon count:
16
Annotation release Status Assembly Chr Location
101 current SLUC_FBN_1.2 (GCF_008315115.2) 8 NC_050180.1 (29366319..29549587, complement)
100 previous assembly SLUC_FBN_1 (GCF_008315115.1) Unplaced Scaffold NW_022173567.1 (908929..1091752)

Chromosome 8 - NC_050180.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC118495618 Neighboring gene uncharacterized LOC116043861 Neighboring gene uncharacterized LOC118495596 Neighboring gene uncharacterized LOC116043806 Neighboring gene somatolactin alpha

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell adhesion molecule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in synapse assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell-cell junction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
kin of IRRE-like protein 3
Names
kirre like nephrin family adhesion molecule 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sander lucioperca Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SLUC_FBN_1.2 Primary Assembly

Genomic

  1. NC_050180.1 Reference SLUC_FBN_1.2 Primary Assembly

    Range
    29366319..29549587 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036004317.1 → XP_035860210.1  kin of IRRE-like protein 3 isoform X10

    UniProtKB/TrEMBL
    A0A8C9YYM2
    Conserved Domains (6) summary
    smart00409
    Location:24 → 113
    IG; Immunoglobulin
    pfam13895
    Location:228 → 296
    Ig_2; Immunoglobulin domain
    cd00096
    Location:317 → 321
    Ig; Ig strand A' [structural motif]
    cd05759
    Location:119 → 220
    IgI_2_KIRREL3-like; Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3, and similar domains; member of the I-set of Ig superfamily (IgSF) domains
    cd05898
    Location:392 → 489
    IgI_5_KIRREL3; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein; member of the I-set of Ig superfamily (IgSF) domains
    cl11960
    Location:309 → 390
    Ig; Immunoglobulin domain

  2. XM_036004316.1 → XP_035860209.1  kin of IRRE-like protein 3 isoform X9

    UniProtKB/TrEMBL
    A0A8C9YYM2
    Conserved Domains (6) summary
    smart00409
    Location:24 → 113
    IG; Immunoglobulin
    pfam13895
    Location:228 → 296
    Ig_2; Immunoglobulin domain
    cd00096
    Location:317 → 321
    Ig; Ig strand A' [structural motif]
    cd05759
    Location:119 → 220
    IgI_2_KIRREL3-like; Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3, and similar domains; member of the I-set of Ig superfamily (IgSF) domains
    cd05898
    Location:392 → 489
    IgI_5_KIRREL3; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein; member of the I-set of Ig superfamily (IgSF) domains
    cl11960
    Location:309 → 390
    Ig; Immunoglobulin domain

  3. XM_036004312.1 → XP_035860205.1  kin of IRRE-like protein 3 isoform X4

    UniProtKB/TrEMBL
    A0A8C9YYM2
    Conserved Domains (6) summary
    smart00409
    Location:24 → 113
    IG; Immunoglobulin
    pfam13895
    Location:228 → 296
    Ig_2; Immunoglobulin domain
    cd00096
    Location:317 → 321
    Ig; Ig strand A' [structural motif]
    cd05759
    Location:119 → 220
    IgI_2_KIRREL3-like; Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3, and similar domains; member of the I-set of Ig superfamily (IgSF) domains
    cd05898
    Location:392 → 489
    IgI_5_KIRREL3; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein; member of the I-set of Ig superfamily (IgSF) domains
    cl11960
    Location:309 → 390
    Ig; Immunoglobulin domain

  4. XM_036004315.1 → XP_035860208.1  kin of IRRE-like protein 3 isoform X8

    UniProtKB/TrEMBL
    A0A8C9YYM2
    Conserved Domains (6) summary
    smart00409
    Location:24 → 113
    IG; Immunoglobulin
    pfam13895
    Location:228 → 296
    Ig_2; Immunoglobulin domain
    cd00096
    Location:317 → 321
    Ig; Ig strand A' [structural motif]
    cd05759
    Location:119 → 220
    IgI_2_KIRREL3-like; Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3, and similar domains; member of the I-set of Ig superfamily (IgSF) domains
    cd05898
    Location:392 → 489
    IgI_5_KIRREL3; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein; member of the I-set of Ig superfamily (IgSF) domains
    cl11960
    Location:309 → 390
    Ig; Immunoglobulin domain

  5. XM_036004314.1 → XP_035860207.1  kin of IRRE-like protein 3 isoform X7

    UniProtKB/TrEMBL
    A0A8C9YYM2
    Related
    ENSSLUP00000029230.2, ENSSLUT00000030164.2
    Conserved Domains (6) summary
    smart00409
    Location:24 → 113
    IG; Immunoglobulin
    pfam13895
    Location:228 → 296
    Ig_2; Immunoglobulin domain
    cd00096
    Location:317 → 321
    Ig; Ig strand A' [structural motif]
    cd05759
    Location:119 → 220
    IgI_2_KIRREL3-like; Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3, and similar domains; member of the I-set of Ig superfamily (IgSF) domains
    cd05898
    Location:392 → 489
    IgI_5_KIRREL3; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein; member of the I-set of Ig superfamily (IgSF) domains
    cl11960
    Location:309 → 390
    Ig; Immunoglobulin domain

  6. XM_036004310.1 → XP_035860203.1  kin of IRRE-like protein 3 isoform X2

    UniProtKB/TrEMBL
    A0A8C9YYM2
    Conserved Domains (6) summary
    smart00409
    Location:24 → 113
    IG; Immunoglobulin
    pfam13895
    Location:228 → 296
    Ig_2; Immunoglobulin domain
    cd00096
    Location:317 → 321
    Ig; Ig strand A' [structural motif]
    cd05759
    Location:119 → 220
    IgI_2_KIRREL3-like; Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3, and similar domains; member of the I-set of Ig superfamily (IgSF) domains
    cd05898
    Location:392 → 489
    IgI_5_KIRREL3; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein; member of the I-set of Ig superfamily (IgSF) domains
    cl11960
    Location:309 → 390
    Ig; Immunoglobulin domain

  7. XM_036004309.1 → XP_035860202.1  kin of IRRE-like protein 3 isoform X1

    UniProtKB/TrEMBL
    A0A8C9YYM2
    Conserved Domains (6) summary
    smart00409
    Location:24 → 113
    IG; Immunoglobulin
    pfam13895
    Location:228 → 296
    Ig_2; Immunoglobulin domain
    cd00096
    Location:317 → 321
    Ig; Ig strand A' [structural motif]
    cd05759
    Location:119 → 220
    IgI_2_KIRREL3-like; Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3, and similar domains; member of the I-set of Ig superfamily (IgSF) domains
    cd05898
    Location:392 → 489
    IgI_5_KIRREL3; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein; member of the I-set of Ig superfamily (IgSF) domains
    cl11960
    Location:309 → 390
    Ig; Immunoglobulin domain

  8. XM_036004313.1 → XP_035860206.1  kin of IRRE-like protein 3 isoform X5

    UniProtKB/TrEMBL
    A0A8C9YYM2
    Related
    ENSSLUP00000072826.1, ENSSLUT00000063484.1
    Conserved Domains (6) summary
    smart00409
    Location:24 → 113
    IG; Immunoglobulin
    pfam13895
    Location:224 → 292
    Ig_2; Immunoglobulin domain
    cd00096
    Location:313 → 317
    Ig; Ig strand A' [structural motif]
    cd05759
    Location:119 → 216
    IgI_2_KIRREL3-like; Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3, and similar domains; member of the I-set of Ig superfamily (IgSF) domains
    cd05898
    Location:388 → 485
    IgI_5_KIRREL3; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein; member of the I-set of Ig superfamily (IgSF) domains
    cl11960
    Location:305 → 386
    Ig; Immunoglobulin domain

  9. XM_036004319.1 → XP_035860212.1  kin of IRRE-like protein 3 isoform X12

    UniProtKB/TrEMBL
    A0A8C9YYM2
    Conserved Domains (6) summary
    smart00409
    Location:24 → 113
    IG; Immunoglobulin
    pfam13895
    Location:224 → 292
    Ig_2; Immunoglobulin domain
    cd00096
    Location:313 → 317
    Ig; Ig strand A' [structural motif]
    cd05759
    Location:119 → 216
    IgI_2_KIRREL3-like; Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3, and similar domains; member of the I-set of Ig superfamily (IgSF) domains
    cd05898
    Location:388 → 485
    IgI_5_KIRREL3; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein; member of the I-set of Ig superfamily (IgSF) domains
    cl11960
    Location:305 → 386
    Ig; Immunoglobulin domain

  10. XM_036004311.1 → XP_035860204.1  kin of IRRE-like protein 3 isoform X3

    UniProtKB/TrEMBL
    A0A8C9YYM2
    Conserved Domains (6) summary
    smart00409
    Location:24 → 113
    IG; Immunoglobulin
    pfam13895
    Location:224 → 292
    Ig_2; Immunoglobulin domain
    cd00096
    Location:313 → 317
    Ig; Ig strand A' [structural motif]
    cd05759
    Location:119 → 216
    IgI_2_KIRREL3-like; Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3, and similar domains; member of the I-set of Ig superfamily (IgSF) domains
    cd05898
    Location:388 → 485
    IgI_5_KIRREL3; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein; member of the I-set of Ig superfamily (IgSF) domains
    cl11960
    Location:305 → 386
    Ig; Immunoglobulin domain

  11. XM_036004318.1 → XP_035860211.1  kin of IRRE-like protein 3 isoform X11

    UniProtKB/TrEMBL
    A0A8C9YYM2
    Conserved Domains (6) summary
    smart00409
    Location:24 → 113
    IG; Immunoglobulin
    pfam13895
    Location:224 → 292
    Ig_2; Immunoglobulin domain
    cd00096
    Location:313 → 317
    Ig; Ig strand A' [structural motif]
    cd05759
    Location:119 → 216
    IgI_2_KIRREL3-like; Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3, and similar domains; member of the I-set of Ig superfamily (IgSF) domains
    cd05898
    Location:388 → 485
    IgI_5_KIRREL3; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein; member of the I-set of Ig superfamily (IgSF) domains
    cl11960
    Location:305 → 386
    Ig; Immunoglobulin domain

  12. XM_031290854.2 → XP_031146714.2  kin of IRRE-like protein 3 isoform X6

    UniProtKB/TrEMBL
    A0A8C9YYM2
    Conserved Domains (6) summary
    smart00409
    Location:24 → 113
    IG; Immunoglobulin
    pfam13895
    Location:224 → 292
    Ig_2; Immunoglobulin domain
    cd00096
    Location:313 → 317
    Ig; Ig strand A' [structural motif]
    cd05759
    Location:119 → 216
    IgI_2_KIRREL3-like; Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3, and similar domains; member of the I-set of Ig superfamily (IgSF) domains
    cd05898
    Location:388 → 485
    IgI_5_KIRREL3; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein; member of the I-set of Ig superfamily (IgSF) domains
    cl11960
    Location:305 → 386
    Ig; Immunoglobulin domain
Nucleotide Protein
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