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tmtc2b transmembrane O-mannosyltransferase targeting cadherins 2b [ Sander lucioperca (pikeperch) ]

Gene ID: 116038585, updated on 21-Aug-2024

Summary

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Gene symbol
tmtc2b
Gene description
transmembrane O-mannosyltransferase targeting cadherins 2b
See related
EnsemblRapid:ENSSLUG00000015672
Gene type
protein coding
RefSeq status
MODEL
Organism
Sander lucioperca
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Percoidei; Percidae; Luciopercinae; Sander
Orthologs
zebrafish all
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Genomic context

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See tmtc2b in Genome Data Viewer
Location:
chromosome: 7
Exon count:
12
Annotation release Status Assembly Chr Location
101 current SLUC_FBN_1.2 (GCF_008315115.2) 7 NC_050179.1 (675083..792119, complement)
100 previous assembly SLUC_FBN_1 (GCF_008315115.1) Unplaced Scaffold NW_022173278.1 (12606260..12722809)

Chromosome 7 - NC_050179.1Genomic Context describing neighboring genes Neighboring gene interleukin-17F-like Neighboring gene zinc finger CCCH-type containing 18 Neighboring gene uncharacterized LOC118495455 Neighboring gene uncharacterized LOC118495449 Neighboring gene calcium release activated channel regulator 2Aa

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein O-linked mannosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein O-mannosyl-transferase TMTC2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sander lucioperca Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SLUC_FBN_1.2 Primary Assembly

Genomic

  1. NC_050179.1 Reference SLUC_FBN_1.2 Primary Assembly

    Range
    675083..792119 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031283099.2 → XP_031138959.1  protein O-mannosyl-transferase TMTC2

    UniProtKB/TrEMBL
    A0A8C9Z9P9
    Related
    ENSSLUP00000035245.1, ENSSLUT00000036339.2
    Conserved Domains (4) summary
    COG0457
    Location:489 → 720
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    COG5010
    Location:651 → 831
    TadD; Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures]
    sd00006
    Location:501 → 529
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:249 → 323
    DUF1736; Domain of unknown function (DUF1736)
Nucleotide Protein
Heading Accession and Version

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