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LOC116030543 alkylated DNA repair protein ALKBH8 homolog [ Ipomoea triloba (trilobed morning glory) ]

Gene ID: 116030543, updated on 14-Dec-2023

Summary

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Gene symbol
LOC116030543
Gene description
alkylated DNA repair protein ALKBH8 homolog
Gene type
protein coding
RefSeq status
MODEL
Organism
Ipomoea triloba
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Genomic context

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See LOC116030543 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
9
Annotation release Status Assembly Chr Location
100 current ASM357664v1 (GCF_003576645.1) 1 NC_044916.1 (37689385..37692461, complement)

Chromosome 1 - NC_044916.1Genomic Context describing neighboring genes Neighboring gene protein NUCLEAR FUSION DEFECTIVE 4-like Neighboring gene pectin acetylesterase 8-like Neighboring gene 60S ribosomal protein L7-2 Neighboring gene probable ubiquitin-like-specific protease 2B

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_044916.1 Chromosome 1 Reference ASM357664v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables demethylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in oxidative demethylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alkylated DNA repair protein ALKBH8 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ipomoea triloba Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM357664v1 Primary Assembly

Genomic

  1. NC_044916.1 Reference ASM357664v1 Primary Assembly

    Range
    37689385..37692461 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031272829.1 → XP_031128689.1  alkylated DNA repair protein ALKBH8 homolog

    Conserved Domains (2) summary
    cl17169
    Location:17 → 95
    RRM_SF; RNA recognition motif (RRM) superfamily
    cl21496
    Location:120 → 323
    2OG-FeII_Oxy; 2OG-Fe(II) oxygenase superfamily

  2. XM_031272837.1 → XP_031128697.1  alkylated DNA repair protein ALKBH8 homolog

    Conserved Domains (2) summary
    cl17169
    Location:17 → 95
    RRM_SF; RNA recognition motif (RRM) superfamily
    cl21496
    Location:120 → 323
    2OG-FeII_Oxy; 2OG-Fe(II) oxygenase superfamily
Nucleotide Protein
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