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LOC116025662 callose synthase 5-like [ Ipomoea triloba (trilobed morning glory) ]

Gene ID: 116025662, updated on 14-Dec-2023

Summary

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Gene symbol
LOC116025662
Gene description
callose synthase 5-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Ipomoea triloba
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Genomic context

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See LOC116025662 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
42
Annotation release Status Assembly Chr Location
100 current ASM357664v1 (GCF_003576645.1) 7 NC_044922.1 (4666979..4687131)

Chromosome 7 - NC_044922.1Genomic Context describing neighboring genes Neighboring gene protein VAC14 homolog Neighboring gene nudix hydrolase 17, mitochondrial Neighboring gene HVA22-like protein k Neighboring gene GRF1-interacting factor 2-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_044922.1 Chromosome 7 Reference ASM357664v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 1,3-beta-D-glucan synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in (1->3)-beta-D-glucan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of 1,3-beta-D-glucan synthase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
callose synthase 5-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ipomoea triloba Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM357664v1 Primary Assembly

Genomic

  1. NC_044922.1 Reference ASM357664v1 Primary Assembly

    Range
    4666979..4687131
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031266980.1 → XP_031122840.1  callose synthase 5-like

    Conserved Domains (3) summary
    pfam02364
    Location:1041 → 1784
    Glucan_synthase; 1,3-beta-glucan synthase component
    pfam04652
    Location:52 → 159
    Vta1; Vta1 like
    pfam14288
    Location:327 → 440
    FKS1_dom1; 1,3-beta-glucan synthase subunit FKS1, domain-1
Nucleotide Protein
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