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LOC116025324 probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY [ Ipomoea triloba (trilobed morning glory) ]

Gene ID: 116025324, updated on 14-Dec-2023

Summary

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Gene symbol
LOC116025324
Gene description
probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY
Gene type
protein coding
RefSeq status
MODEL
Organism
Ipomoea triloba
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Genomic context

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See LOC116025324 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
18
Annotation release Status Assembly Chr Location
100 current ASM357664v1 (GCF_003576645.1) 1 NC_044916.1 (16875017..16884799)

Chromosome 1 - NC_044916.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC116004900 Neighboring gene uncharacterized LOC116004996 Neighboring gene peptidyl-prolyl cis-trans isomerase CYP18-2 Neighboring gene mitochondrial fission protein ELM1-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_044916.1 Chromosome 1 Reference ASM357664v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ipomoea triloba Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM357664v1 Primary Assembly

Genomic

  1. NC_044916.1 Reference ASM357664v1 Primary Assembly

    Range
    16875017..16884799
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031266537.1 → XP_031122397.1  probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY

    Conserved Domains (3) summary
    COG0457
    Location:177 → 451
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    COG3914
    Location:317 → 849
    Spy; Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
    sd00006
    Location:334 → 362
    TPR; TPR repeat [structural motif]

  2. XM_031266531.1 → XP_031122391.1  probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY

    Conserved Domains (3) summary
    COG0457
    Location:177 → 451
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    COG3914
    Location:317 → 849
    Spy; Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
    sd00006
    Location:334 → 362
    TPR; TPR repeat [structural motif]
Nucleotide Protein
Heading Accession and Version

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