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LOC116023297 arabinosyltransferase XEG113 [ Ipomoea triloba (trilobed morning glory) ]

Gene ID: 116023297, updated on 14-Dec-2023

Summary

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Gene symbol
LOC116023297
Gene description
arabinosyltransferase XEG113
Gene type
protein coding
RefSeq status
MODEL
Organism
Ipomoea triloba
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Genomic context

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See LOC116023297 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
13
Annotation release Status Assembly Chr Location
100 current ASM357664v1 (GCF_003576645.1) 6 NC_044921.1 (22682010..22688928, complement)

Chromosome 6 - NC_044921.1Genomic Context describing neighboring genes Neighboring gene glycine-rich protein A3-like Neighboring gene ABC transporter E family member 2 Neighboring gene salt tolerance receptor-like cytoplasmic kinase 1 Neighboring gene abscisic acid 8'-hydroxylase CYP707A2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_044921.1 Chromosome 6 Reference ASM357664v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables arabinosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell wall pectin biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
arabinosyltransferase XEG113

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ipomoea triloba Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM357664v1 Primary Assembly

Genomic

  1. NC_044921.1 Reference ASM357664v1 Primary Assembly

    Range
    22682010..22688928 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031264290.1 → XP_031120150.1  arabinosyltransferase XEG113

    Conserved Domains (2) summary
    pfam03407
    Location:148 → 372
    Nucleotid_trans; Nucleotide-diphospho-sugar transferase
    pfam10250
    Location:418 → 447
    O-FucT; GDP-fucose protein O-fucosyltransferase
Nucleotide Protein
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