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LOC116022103 probable beta-1,4-xylosyltransferase IRX9H [ Ipomoea triloba (trilobed morning glory) ]

Gene ID: 116022103, updated on 14-Dec-2023

Summary

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Gene symbol
LOC116022103
Gene description
probable beta-1,4-xylosyltransferase IRX9H
Gene type
protein coding
RefSeq status
MODEL
Organism
Ipomoea triloba
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Genomic context

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See LOC116022103 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
4
Annotation release Status Assembly Chr Location
100 current ASM357664v1 (GCF_003576645.1) 6 NC_044921.1 (24864912..24867734)

Chromosome 6 - NC_044921.1Genomic Context describing neighboring genes Neighboring gene sucrose transport protein SUC4 Neighboring gene protein DETOXIFICATION 48-like Neighboring gene ubiquitin-fold modifier-conjugating enzyme 1 Neighboring gene phosphoenolpyruvate carboxykinase (ATP)-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_044921.1 Chromosome 6 Reference ASM357664v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables xylosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glucuronoxylan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plant-type secondary cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable beta-1,4-xylosyltransferase IRX9H

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ipomoea triloba Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM357664v1 Primary Assembly

Genomic

  1. NC_044921.1 Reference ASM357664v1 Primary Assembly

    Range
    24864912..24867734
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031262666.1 → XP_031118526.1  probable beta-1,4-xylosyltransferase IRX9H isoform X1

    Conserved Domains (1) summary
    cd00218
    Location:153 → 381
    GlcAT-I; Beta1,3-glucuronyltransferase I (GlcAT-I) is involved in the initial steps of proteoglycan synthesis

  2. XM_031262669.1 → XP_031118529.1  probable beta-1,4-xylosyltransferase IRX9H isoform X1

    Conserved Domains (1) summary
    cd00218
    Location:153 → 381
    GlcAT-I; Beta1,3-glucuronyltransferase I (GlcAT-I) is involved in the initial steps of proteoglycan synthesis

  3. XM_031262665.1 → XP_031118525.1  probable beta-1,4-xylosyltransferase IRX9H isoform X1

    Conserved Domains (1) summary
    cd00218
    Location:153 → 381
    GlcAT-I; Beta1,3-glucuronyltransferase I (GlcAT-I) is involved in the initial steps of proteoglycan synthesis

  4. XM_031262670.1 → XP_031118530.1  probable beta-1,4-xylosyltransferase IRX9H isoform X2

    Conserved Domains (1) summary
    cd00218
    Location:124 → 352
    GlcAT-I; Beta1,3-glucuronyltransferase I (GlcAT-I) is involved in the initial steps of proteoglycan synthesis

  5. XM_031262667.1 → XP_031118527.1  probable beta-1,4-xylosyltransferase IRX9H isoform X1

    Conserved Domains (1) summary
    cd00218
    Location:153 → 381
    GlcAT-I; Beta1,3-glucuronyltransferase I (GlcAT-I) is involved in the initial steps of proteoglycan synthesis

  6. XM_031262668.1 → XP_031118528.1  probable beta-1,4-xylosyltransferase IRX9H isoform X1

    Conserved Domains (1) summary
    cd00218
    Location:153 → 381
    GlcAT-I; Beta1,3-glucuronyltransferase I (GlcAT-I) is involved in the initial steps of proteoglycan synthesis

  7. XM_031262671.1 → XP_031118531.1  probable beta-1,4-xylosyltransferase IRX9H isoform X3

    Conserved Domains (1) summary
    cd00218
    Location:68 → 296
    GlcAT-I; Beta1,3-glucuronyltransferase I (GlcAT-I) is involved in the initial steps of proteoglycan synthesis
Nucleotide Protein
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