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LOC116021065 putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 3 [ Ipomoea triloba (trilobed morning glory) ]

Gene ID: 116021065, updated on 14-Dec-2023

Summary

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Gene symbol
LOC116021065
Gene description
putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 3
Gene type
protein coding
RefSeq status
MODEL
Organism
Ipomoea triloba
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Genomic context

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See LOC116021065 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
5
Annotation release Status Assembly Chr Location
100 current ASM357664v1 (GCF_003576645.1) 5 NC_044920.1 (17278521..17282978)

Chromosome 5 - NC_044920.1Genomic Context describing neighboring genes Neighboring gene diacylglycerol O-acyltransferase 3 Neighboring gene uncharacterized LOC116020328 Neighboring gene zinc finger CCCH domain-containing protein 55-like Neighboring gene serine carboxypeptidase-like 42

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_044920.1 Chromosome 5 Reference ASM357664v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in xylan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ipomoea triloba Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM357664v1 Primary Assembly

Genomic

  1. NC_044920.1 Reference ASM357664v1 Primary Assembly

    Range
    17278521..17282978
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031261670.1 → XP_031117530.1  putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 3 isoform X1

    Conserved Domains (1) summary
    cd02537
    Location:320 → 565
    GT8_Glycogenin; Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen

  2. XM_031261672.1 → XP_031117532.1  putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 3 isoform X2

    Conserved Domains (1) summary
    cd02537
    Location:310 → 555
    GT8_Glycogenin; Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen
Nucleotide Protein
Heading Accession and Version

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