U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC116020120 beta-1,2-xylosyltransferase [ Ipomoea triloba (trilobed morning glory) ]

Gene ID: 116020120, updated on 14-Dec-2023

Summary

Go to the top of the page Help
Gene symbol
LOC116020120
Gene description
beta-1,2-xylosyltransferase
Gene type
protein coding
RefSeq status
MODEL
Organism
Ipomoea triloba
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC116020120 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
3
Annotation release Status Assembly Chr Location
100 current ASM357664v1 (GCF_003576645.1) 5 NC_044920.1 (30650557..30653506)

Chromosome 5 - NC_044920.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC116020559 Neighboring gene glycerophosphodiester phosphodiesterase GDPDL3-like Neighboring gene putative MO25-like protein At5g47540 Neighboring gene chloroplastic import inner membrane translocase subunit TIM22-2-like

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_044920.1 Chromosome 5 Reference ASM357664v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
beta-1,2-xylosyltransferase

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Ipomoea triloba Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM357664v1 Primary Assembly

Genomic

  1. NC_044920.1 Reference ASM357664v1 Primary Assembly

    Range
    30650557..30653506
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031260608.1 → XP_031116468.1  beta-1,2-xylosyltransferase

    Conserved Domains (1) summary
    pfam04577
    Location:246 → 495
    DUF563; Protein of unknown function (DUF563)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases