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LOC116019935 putative callose synthase 8 [ Ipomoea triloba (trilobed morning glory) ]

Gene ID: 116019935, updated on 14-Dec-2023

Summary

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Gene symbol
LOC116019935
Gene description
putative callose synthase 8
Gene type
protein coding
RefSeq status
MODEL
Organism
Ipomoea triloba
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Genomic context

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See LOC116019935 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
41
Annotation release Status Assembly Chr Location
100 current ASM357664v1 (GCF_003576645.1) 1 NC_044916.1 (26490494..26507058, complement)

Chromosome 1 - NC_044916.1Genomic Context describing neighboring genes Neighboring gene transfer RNA glutamine (anticodon UUG) Neighboring gene persulfide dioxygenase ETHE1 homolog, mitochondrial Neighboring gene pentatricopeptide repeat-containing protein At1g53600, mitochondrial Neighboring gene F-box/FBD/LRR-repeat protein At1g13570-like Neighboring gene F-box/FBD/LRR-repeat protein At1g13570-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_044916.1 Chromosome 1 Reference ASM357664v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 1,3-beta-D-glucan synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in (1->3)-beta-D-glucan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of 1,3-beta-D-glucan synthase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
putative callose synthase 8

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ipomoea triloba Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM357664v1 Primary Assembly

Genomic

  1. NC_044916.1 Reference ASM357664v1 Primary Assembly

    Range
    26490494..26507058 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031260344.1 → XP_031116204.1  putative callose synthase 8 isoform X2

    Conserved Domains (3) summary
    pfam02364
    Location:1084 → 1790
    Glucan_synthase; 1,3-beta-glucan synthase component
    pfam04652
    Location:62 → 112
    Vta1; Vta1 like
    pfam14288
    Location:341 → 442
    FKS1_dom1; 1,3-beta-glucan synthase subunit FKS1, domain-1

  2. XM_031260336.1 → XP_031116196.1  putative callose synthase 8 isoform X1

    Conserved Domains (3) summary
    pfam02364
    Location:1084 → 1805
    Glucan_synthase; 1,3-beta-glucan synthase component
    pfam04652
    Location:62 → 112
    Vta1; Vta1 like
    pfam14288
    Location:341 → 442
    FKS1_dom1; 1,3-beta-glucan synthase subunit FKS1, domain-1

  3. XM_031260351.1 → XP_031116211.1  putative callose synthase 8 isoform X3

    Conserved Domains (2) summary
    pfam02364
    Location:788 → 1509
    Glucan_synthase; 1,3-beta-glucan synthase component
    pfam14288
    Location:45 → 146
    FKS1_dom1; 1,3-beta-glucan synthase subunit FKS1, domain-1

  4. XM_031260360.1 → XP_031116220.1  putative callose synthase 8 isoform X4

    Conserved Domains (2) summary
    pfam02364
    Location:735 → 1456
    Glucan_synthase; 1,3-beta-glucan synthase component
    pfam14288
    Location:1 → 93
    FKS1_dom1; 1,3-beta-glucan synthase subunit FKS1, domain-1
Nucleotide Protein
Heading Accession and Version

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