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LOC116019089 hydroxyproline O-galactosyltransferase HPGT1-like [ Ipomoea triloba (trilobed morning glory) ]

Gene ID: 116019089, updated on 14-Dec-2023

Summary

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Gene symbol
LOC116019089
Gene description
hydroxyproline O-galactosyltransferase HPGT1-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Ipomoea triloba
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Genomic context

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See LOC116019089 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
12
Annotation release Status Assembly Chr Location
100 current ASM357664v1 (GCF_003576645.1) 5 NC_044920.1 (26199685..26204051)

Chromosome 5 - NC_044920.1Genomic Context describing neighboring genes Neighboring gene peroxisome biosynthesis protein PAS1-like Neighboring gene G-type lectin S-receptor-like serine/threonine-protein kinase At5g24080 Neighboring gene uncharacterized LOC116020873 Neighboring gene uncharacterized LOC116019747 Neighboring gene putative pentatricopeptide repeat-containing protein At3g49142

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_044920.1 Chromosome 5 Reference ASM357664v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hexosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
hydroxyproline O-galactosyltransferase HPGT1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ipomoea triloba Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM357664v1 Primary Assembly

Genomic

  1. NC_044920.1 Reference ASM357664v1 Primary Assembly

    Range
    26199685..26204051
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031259178.1 → XP_031115038.1  hydroxyproline O-galactosyltransferase HPGT1-like

    Conserved Domains (2) summary
    PLN03193
    Location:80 → 327
    PLN03193; beta-1,3-galactosyltransferase; Provisional
    pfam13334
    Location:17 → 93
    DUF4094; Domain of unknown function (DUF4094)
Nucleotide Protein
Heading Accession and Version

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