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LOC116015608 xyloglucan 6-xylosyltransferase 2-like [ Ipomoea triloba (trilobed morning glory) ]

Gene ID: 116015608, updated on 14-Dec-2023

Summary

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Gene symbol
LOC116015608
Gene description
xyloglucan 6-xylosyltransferase 2-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Ipomoea triloba
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Genomic context

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See LOC116015608 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
1
Annotation release Status Assembly Chr Location
100 current ASM357664v1 (GCF_003576645.1) 4 NC_044919.1 (10512065..10513848)

Chromosome 4 - NC_044919.1Genomic Context describing neighboring genes Neighboring gene receptor-like protein 15 Neighboring gene heat shock factor-binding protein-like Neighboring gene uncharacterized LOC116016710 Neighboring gene isoleucine--tRNA ligase, chloroplastic/mitochondrial

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_044919.1 Chromosome 4 Reference ASM357664v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables UDP-xylosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables hexosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables xyloglucan 6-xylosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in xyloglucan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in trans-Golgi network IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
xyloglucan 6-xylosyltransferase 2-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ipomoea triloba Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM357664v1 Primary Assembly

Genomic

  1. NC_044919.1 Reference ASM357664v1 Primary Assembly

    Range
    10512065..10513848
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031255716.1 → XP_031111576.1  xyloglucan 6-xylosyltransferase 2-like

    Conserved Domains (1) summary
    PLN03182
    Location:1 → 453
    PLN03182; xyloglucan 6-xylosyltransferase; Provisional
Nucleotide Protein
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Molecular Biology Databases