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LOC116004214 rhamnogalacturonan I rhamnosyltransferase 1 [ Ipomoea triloba (trilobed morning glory) ]

Gene ID: 116004214, updated on 14-Dec-2023

Summary

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Gene symbol
LOC116004214
Gene description
rhamnogalacturonan I rhamnosyltransferase 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Ipomoea triloba
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Genomic context

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See LOC116004214 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
8
Annotation release Status Assembly Chr Location
100 current ASM357664v1 (GCF_003576645.1) 14 NC_044929.1 (2226658..2230795, complement)

Chromosome 14 - NC_044929.1Genomic Context describing neighboring genes Neighboring gene probable isoprenylcysteine alpha-carbonyl methylesterase ICMEL2 Neighboring gene ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic Neighboring gene transmembrane emp24 domain-containing protein p24delta9-like Neighboring gene integrin-linked protein kinase 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_044929.1 Chromosome 14 Reference ASM357664v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in chloroplast IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
rhamnogalacturonan I rhamnosyltransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ipomoea triloba Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM357664v1 Primary Assembly

Genomic

  1. NC_044929.1 Reference ASM357664v1 Primary Assembly

    Range
    2226658..2230795 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031244173.1 → XP_031100033.1  rhamnogalacturonan I rhamnosyltransferase 1

    Conserved Domains (1) summary
    cd11299
    Location:101 → 425
    O-FucT_plant; GDP-fucose protein O-fucosyltransferase, plant specific subfamily
Nucleotide Protein
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