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LOC115996773 probable xyloglucan 6-xylosyltransferase 3 [ Ipomoea triloba (trilobed morning glory) ]

Gene ID: 115996773, updated on 14-Dec-2023

Summary

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Gene symbol
LOC115996773
Gene description
probable xyloglucan 6-xylosyltransferase 3
Gene type
protein coding
RefSeq status
MODEL
Organism
Ipomoea triloba
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Genomic context

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See LOC115996773 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
2
Annotation release Status Assembly Chr Location
100 current ASM357664v1 (GCF_003576645.1) 11 NC_044926.1 (11745150..11748472, complement)

Chromosome 11 - NC_044926.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC115995912 Neighboring gene uncharacterized LOC115996351 Neighboring gene uncharacterized LOC115995913 Neighboring gene transfer RNA lysine (anticodon UUU)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_044926.1 Chromosome 11 Reference ASM357664v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hexosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in xyloglucan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in trans-Golgi network IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable xyloglucan 6-xylosyltransferase 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ipomoea triloba Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM357664v1 Primary Assembly

Genomic

  1. NC_044926.1 Reference ASM357664v1 Primary Assembly

    Range
    11745150..11748472 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031236178.1 → XP_031092038.1  probable xyloglucan 6-xylosyltransferase 3

    Conserved Domains (1) summary
    PLN03182
    Location:41 → 455
    PLN03182; xyloglucan 6-xylosyltransferase; Provisional

  2. XM_031236177.1 → XP_031092037.1  probable xyloglucan 6-xylosyltransferase 3

    Conserved Domains (1) summary
    PLN03182
    Location:41 → 455
    PLN03182; xyloglucan 6-xylosyltransferase; Provisional
Nucleotide Protein
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