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LOC115977729 F-box protein GID2-like [ Quercus lobata ]

Gene ID: 115977729, updated on 14-Dec-2023

Summary

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Gene symbol
LOC115977729
Gene description
F-box protein GID2-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Quercus lobata
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
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Genomic context

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See LOC115977729 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
1
Annotation release Status Assembly Chr Location
100 current ValleyOak3.0 (GCF_001633185.1) 2 NC_044905.1 (3440502..3441541)

Chromosome 2 - NC_044905.1Genomic Context describing neighboring genes Neighboring gene thylakoid lumenal 29 kDa protein, chloroplastic-like Neighboring gene transfer RNA isoleucine (anticodon AAU) Neighboring gene protein MRG2-like Neighboring gene putative receptor protein kinase ZmPK1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_044905.1 Chromosome 2 Reference ValleyOak3.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in gibberellic acid mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of gibberellic acid mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of SCF ubiquitin ligase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
F-box protein GID2-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Quercus lobata Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ValleyOak3.0

Genomic

  1. NC_044905.1 Reference ValleyOak3.0

    Range
    3440502..3441541
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031099748.1 → XP_030955608.1  F-box protein GID2-like

    UniProtKB/TrEMBL
    A0A7N2KRX9
    Conserved Domains (1) summary
    pfam00646
    Location:41 → 84
    F-box; F-box domain
Nucleotide Protein
Heading Accession and Version

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