U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC115977693 uncharacterized LOC115977693 [ Quercus lobata ]

Gene ID: 115977693, updated on 14-Dec-2023

Summary

Go to the top of the page Help
Gene symbol
LOC115977693
Gene description
uncharacterized LOC115977693
Gene type
protein coding
RefSeq status
MODEL
Organism
Quercus lobata
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC115977693 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
5
Annotation release Status Assembly Chr Location
100 current ValleyOak3.0 (GCF_001633185.1) 2 NC_044905.1 (104236212..104238790, complement)

Chromosome 2 - NC_044905.1Genomic Context describing neighboring genes Neighboring gene glutathione S-transferase zeta class-like Neighboring gene glutathione S-transferase zeta class-like Neighboring gene DNA topoisomerase 2-like Neighboring gene small nucleolar RNA R71

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_044905.1 Chromosome 2 Reference ValleyOak3.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 8-oxo-7,8-dihydroguanine DNA N-glycosylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in base-excision repair, AP site formation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
uncharacterized protein LOC115977693

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Quercus lobata Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ValleyOak3.0

Genomic

  1. NC_044905.1 Reference ValleyOak3.0

    Range
    104236212..104238790 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031099710.1 → XP_030955570.1  uncharacterized protein LOC115977693 isoform X1

    UniProtKB/TrEMBL
    A0A7N2R0I3
    Conserved Domains (1) summary
    COG0122
    Location:273 → 416
    AlkA; 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase [Replication, recombination and repair]

  2. XM_031099713.1 → XP_030955573.1  uncharacterized protein LOC115977693 isoform X4

    Conserved Domains (1) summary
    COG0122
    Location:158 → 298
    AlkA; 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase [Replication, recombination and repair]

  3. XM_031099711.1 → XP_030955571.1  uncharacterized protein LOC115977693 isoform X2

    Conserved Domains (1) summary
    COG0122
    Location:270 → 413
    AlkA; 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase [Replication, recombination and repair]

  4. XM_031099712.1 → XP_030955572.1  uncharacterized protein LOC115977693 isoform X3

    Conserved Domains (1) summary
    COG0122
    Location:273 → 389
    AlkA; 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase [Replication, recombination and repair]

RNA

  1. XR_004088586.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases