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LOC115971974 probable beta-1,4-xylosyltransferase IRX9H [ Quercus lobata ]

Gene ID: 115971974, updated on 14-Dec-2023

Summary

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Gene symbol
LOC115971974
Gene description
probable beta-1,4-xylosyltransferase IRX9H
Gene type
protein coding
RefSeq status
MODEL
Organism
Quercus lobata
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
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Genomic context

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See LOC115971974 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
5
Annotation release Status Assembly Chr Location
100 current ValleyOak3.0 (GCF_001633185.1) 12 NC_044915.1 (29437855..29442314, complement)

Chromosome 12 - NC_044915.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC115969887 Neighboring gene transfer RNA serine (anticodon CGA) Neighboring gene ER membrane protein complex subunit 1 Neighboring gene E3 ubiquitin-protein ligase PUB23

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_044915.1 Chromosome 12 Reference ValleyOak3.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables xylosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glucuronoxylan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plant-type secondary cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable beta-1,4-xylosyltransferase IRX9H

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Quercus lobata Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ValleyOak3.0

Genomic

  1. NC_044915.1 Reference ValleyOak3.0

    Range
    29437855..29442314 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031092102.1 → XP_030947962.1  probable beta-1,4-xylosyltransferase IRX9H

    UniProtKB/TrEMBL
    A0A7N2REV4
    Conserved Domains (1) summary
    cd00218
    Location:187 → 413
    GlcAT-I; Beta1,3-glucuronyltransferase I (GlcAT-I) is involved in the initial steps of proteoglycan synthesis

  2. XM_031092103.1 → XP_030947963.1  probable beta-1,4-xylosyltransferase IRX9H

    UniProtKB/TrEMBL
    A0A7N2REV4
    Conserved Domains (1) summary
    cd00218
    Location:187 → 413
    GlcAT-I; Beta1,3-glucuronyltransferase I (GlcAT-I) is involved in the initial steps of proteoglycan synthesis

  3. XM_031092104.1 → XP_030947964.1  probable beta-1,4-xylosyltransferase IRX9H

    UniProtKB/TrEMBL
    A0A7N2REV4
    Conserved Domains (1) summary
    cd00218
    Location:187 → 413
    GlcAT-I; Beta1,3-glucuronyltransferase I (GlcAT-I) is involved in the initial steps of proteoglycan synthesis
Nucleotide Protein
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