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LOC115927614 protein O-mannosyl-transferase TMTC3-like [ Strongylocentrotus purpuratus (purple sea urchin) ]

Gene ID: 115927614, updated on 14-Dec-2023

Summary

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Gene symbol
LOC115927614
Gene description
protein O-mannosyl-transferase TMTC3-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Strongylocentrotus purpuratus
Lineage
Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Camarodonta; Echinidea; Strongylocentrotidae; Strongylocentrotus
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Genomic context

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See LOC115927614 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
18
Annotation release Status Assembly Chr Location
102 current Spur_5.0 (GCF_000002235.5) Unplaced Scaffold NW_022145558.1 (159789..196737)

NW_022145558.1Genomic Context describing neighboring genes Neighboring gene kinetochore protein spc24-like Neighboring gene protein O-mannosyl-transferase TMTC3 Neighboring gene centrocin 1 Neighboring gene T-complex protein 11-like protein 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_022145558 Unplaced Scaffold Reference Spur_5.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein O-linked mannosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein O-mannosyl-transferase TMTC3-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Strongylocentrotus purpuratus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Spur_5.0 Primary Assembly

Genomic

  1. NW_022145558.1 Reference Spur_5.0 Primary Assembly

    Range
    159789..196737
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030993715.1 → XP_030849575.1  protein O-mannosyl-transferase TMTC3-like

    UniProtKB/TrEMBL
    A0A7M7PDE7
    Conserved Domains (3) summary
    TIGR02917
    Location:522 → 873
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:643 → 669
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:340 → 404
    DUF1736; Domain of unknown function (DUF1736)
Nucleotide Protein
Heading Accession and Version

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