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LOC115927446 glucoside xylosyltransferase 1-like [ Strongylocentrotus purpuratus (purple sea urchin) ]

Gene ID: 115927446, updated on 14-Dec-2023

Summary

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Gene symbol
LOC115927446
Gene description
glucoside xylosyltransferase 1-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Strongylocentrotus purpuratus
Lineage
Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Camarodonta; Echinidea; Strongylocentrotidae; Strongylocentrotus
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Genomic context

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See LOC115927446 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
102 current Spur_5.0 (GCF_000002235.5) Unplaced Scaffold NW_022145606.1 (39706650..39723260, complement)

NW_022145606.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105445914 Neighboring gene serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A-like Neighboring gene bifunctional arginine demethylase and lysyl-hydroxylase JMJD6-like Neighboring gene integrator complex subunit 12

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_022145606 Unplaced Scaffold Reference Spur_5.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene structure in the sea urchin Strongylocentrotus purpuratus based on transcriptome analysis. Tu Q, et al. Genome Res, 2012 Oct. PMID 22709795, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables UDP-xylosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in O-glycan processing IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glucoside xylosyltransferase 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Strongylocentrotus purpuratus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Spur_5.0 Primary Assembly

Genomic

  1. NW_022145606.1 Reference Spur_5.0 Primary Assembly

    Range
    39706650..39723260 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030993344.1 → XP_030849204.1  glucoside xylosyltransferase 1-like isoform X4

    UniProtKB/TrEMBL
    A0A7M7PEI5

  2. XM_030993342.1 → XP_030849202.1  glucoside xylosyltransferase 1-like isoform X2

    UniProtKB/TrEMBL
    A0A7M7PCI8
    Conserved Domains (2) summary
    cd06430
    Location:264 → 559
    GT8_like_2; GT8_like_2 represents a subfamily of GT8 with unknown function
    pfam07174
    Location:129 → 212
    FAP; Fibronectin-attachment protein (FAP)

  3. XM_030993343.1 → XP_030849203.1  glucoside xylosyltransferase 1-like isoform X3

    UniProtKB/TrEMBL
    A0A7M7PCI8
    Conserved Domains (2) summary
    cd06430
    Location:264 → 559
    GT8_like_2; GT8_like_2 represents a subfamily of GT8 with unknown function
    pfam07174
    Location:129 → 212
    FAP; Fibronectin-attachment protein (FAP)

  4. XM_030993341.1 → XP_030849201.1  glucoside xylosyltransferase 1-like isoform X1

    UniProtKB/TrEMBL
    A0A7M7PCI8
Nucleotide Protein
Heading Accession and Version

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