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LOC115926788 polypeptide N-acetylgalactosaminyltransferase 13-like [ Strongylocentrotus purpuratus (purple sea urchin) ]

Gene ID: 115926788, updated on 14-Dec-2023

Summary

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Gene symbol
LOC115926788
Gene description
polypeptide N-acetylgalactosaminyltransferase 13-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Strongylocentrotus purpuratus
Lineage
Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Camarodonta; Echinidea; Strongylocentrotidae; Strongylocentrotus
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Genomic context

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See LOC115926788 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
102 current Spur_5.0 (GCF_000002235.5) Unplaced Scaffold NW_022145553.1 (235093..260130, complement)

NW_022145553.1Genomic Context describing neighboring genes Neighboring gene polypeptide N-acetylgalactosaminyltransferase 13 Neighboring gene transient receptor potential-gamma protein Neighboring gene uncharacterized LOC115926786 Neighboring gene polypeptide N-acetylgalactosaminyltransferase 13-like Neighboring gene uncharacterized LOC105447011 Neighboring gene uncharacterized LOC576837

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_022145553 Unplaced Scaffold Reference Spur_5.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polypeptide N-acetylgalactosaminyltransferase 13-like
Names
polypeptide N-acetylgalactosaminyltransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Strongylocentrotus purpuratus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Spur_5.0 Primary Assembly

Genomic

  1. NW_022145553.1 Reference Spur_5.0 Primary Assembly

    Range
    235093..260130 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030992151.1 → XP_030848011.1  polypeptide N-acetylgalactosaminyltransferase 13-like isoform X2

    UniProtKB/TrEMBL
    A0A7M7P9E0
    Conserved Domains (2) summary
    cd02510
    Location:302 → 607
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    cl26069
    Location:618 → 749
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain

  2. XM_030992143.1 → XP_030848003.1  polypeptide N-acetylgalactosaminyltransferase 13-like isoform X1

    UniProtKB/TrEMBL
    A0A7M7PBS9
    Conserved Domains (2) summary
    cd02510
    Location:302 → 608
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    cl26069
    Location:619 → 750
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain
Nucleotide Protein
Heading Accession and Version

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