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LOC115925825 beta-1,4-galactosyltransferase 5-like [ Strongylocentrotus purpuratus (purple sea urchin) ]

Gene ID: 115925825, updated on 14-Dec-2023

Summary

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Gene symbol
LOC115925825
Gene description
beta-1,4-galactosyltransferase 5-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Strongylocentrotus purpuratus
Lineage
Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Camarodonta; Echinidea; Strongylocentrotidae; Strongylocentrotus
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Genomic context

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See LOC115925825 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
102 current Spur_5.0 (GCF_000002235.5) Unplaced Scaffold NW_022145604.1 (14959238..14982094, complement)

NW_022145604.1Genomic Context describing neighboring genes Neighboring gene phosphatidylinositol 5-phosphate 4-kinase type-2 alpha Neighboring gene probable serine carboxypeptidase CPVL Neighboring gene chondroadherin-like Neighboring gene uncharacterized LOC100891939

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_022145604 Unplaced Scaffold Reference Spur_5.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables UDP-galactose:glucosylceramide beta-1,4-galactosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-1,4-galactosyltransferase 5-like
Names
beta-1,4-galactosyltransferase 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Strongylocentrotus purpuratus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Spur_5.0 Primary Assembly

Genomic

  1. NW_022145604.1 Reference Spur_5.0 Primary Assembly

    Range
    14959238..14982094 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030989796.1 → XP_030845656.1  beta-1,4-galactosyltransferase 5-like

    UniProtKB/TrEMBL
    A0A7M7T0V3
    Conserved Domains (1) summary
    pfam13733
    Location:183 → 283
    Glyco_transf_7N; N-terminal region of glycosyl transferase group 7
Nucleotide Protein
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