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LOC115922761 uncharacterized LOC115922761 [ Strongylocentrotus purpuratus (purple sea urchin) ]

Gene ID: 115922761, updated on 14-Dec-2023

Summary

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Gene symbol
LOC115922761
Gene description
uncharacterized LOC115922761
Gene type
protein coding
RefSeq status
MODEL
Organism
Strongylocentrotus purpuratus
Lineage
Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Camarodonta; Echinidea; Strongylocentrotidae; Strongylocentrotus
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Genomic context

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See LOC115922761 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
2
Annotation release Status Assembly Chr Location
102 current Spur_5.0 (GCF_000002235.5) Unplaced Scaffold NW_022145597.1 (29102974..29109069)

NW_022145597.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105444320 Neighboring gene uncharacterized LOC105444316 Neighboring gene glycoprotein 3-alpha-L-fucosyltransferase A-like Neighboring gene protein FAM43B

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_022145597 Unplaced Scaffold Reference Spur_5.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-(1->3)-fucosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in fucosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein LOC115922761

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Strongylocentrotus purpuratus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Spur_5.0 Primary Assembly

Genomic

  1. NW_022145597.1 Reference Spur_5.0 Primary Assembly

    Range
    29102974..29109069
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030982336.1 → XP_030838196.1  uncharacterized protein LOC115922761

    UniProtKB/TrEMBL
    A0A7M7NLD8
    Conserved Domains (2) summary
    pfam00852
    Location:332 → 502
    Glyco_transf_10; Glycosyltransferase family 10 (fucosyltransferase) C-term
    pfam17039
    Location:231 → 313
    Glyco_tran_10_N; Fucosyltransferase, N-terminal
Nucleotide Protein
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