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LOC115919040 carbohydrate sulfotransferase 11-like [ Strongylocentrotus purpuratus (purple sea urchin) ]

Gene ID: 115919040, updated on 14-Dec-2023

Summary

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Gene symbol
LOC115919040
Gene description
carbohydrate sulfotransferase 11-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Strongylocentrotus purpuratus
Lineage
Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Camarodonta; Echinidea; Strongylocentrotidae; Strongylocentrotus
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Genomic context

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See LOC115919040 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
102 current Spur_5.0 (GCF_000002235.5) Unplaced Scaffold NW_022145566.1 (1881586..1929318, complement)

NW_022145566.1Genomic Context describing neighboring genes Neighboring gene abl interactor 2-like Neighboring gene carbohydrate sulfotransferase 11-like Neighboring gene centrin-3 Neighboring gene transfer RNA valine (anticodon CAC) Neighboring gene pogo transposable element with ZNF domain

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_022145566 Unplaced Scaffold Reference Spur_5.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene structure in the sea urchin Strongylocentrotus purpuratus based on transcriptome analysis. Tu Q, et al. Genome Res, 2012 Oct. PMID 22709795, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
carbohydrate sulfotransferase 11-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Strongylocentrotus purpuratus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Spur_5.0 Primary Assembly

Genomic

  1. NW_022145566.1 Reference Spur_5.0 Primary Assembly

    Range
    1881586..1929318 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030997665.1 → XP_030853525.1  carbohydrate sulfotransferase 11-like

    UniProtKB/TrEMBL
    A0A7M7PQF2
    Conserved Domains (1) summary
    pfam03567
    Location:142 → 383
    Sulfotransfer_2; Sulfotransferase family

  2. XM_030997656.1 → XP_030853516.1  carbohydrate sulfotransferase 11-like

    UniProtKB/TrEMBL
    A0A7M7PQF2
    Conserved Domains (1) summary
    pfam03567
    Location:142 → 383
    Sulfotransfer_2; Sulfotransferase family

  3. XM_030997672.1 → XP_030853532.1  carbohydrate sulfotransferase 11-like

    UniProtKB/TrEMBL
    A0A7M7PQF2
    Conserved Domains (1) summary
    pfam03567
    Location:142 → 383
    Sulfotransfer_2; Sulfotransferase family
Nucleotide Protein
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Gene LinkOut

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