U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC115918716 exostosin-2-like [ Strongylocentrotus purpuratus (purple sea urchin) ]

Gene ID: 115918716, updated on 14-Dec-2023

Summary

Go to the top of the page Help
Gene symbol
LOC115918716
Gene description
exostosin-2-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Strongylocentrotus purpuratus
Lineage
Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Camarodonta; Echinidea; Strongylocentrotidae; Strongylocentrotus
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC115918716 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
102 current Spur_5.0 (GCF_000002235.5) Unplaced Scaffold NW_022145602.1 (15178729..15191232, complement)

NW_022145602.1Genomic Context describing neighboring genes Neighboring gene ADP-ribosylation factor GTPase-activating protein 2 Neighboring gene small nucleolar RNA SNORA57 Neighboring gene uncharacterized LOC115917902 Neighboring gene transfer RNA lysine (anticodon UUU) Neighboring gene sn1-specific diacylglycerol lipase alpha

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_022145602 Unplaced Scaffold Reference Spur_5.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Gene structure in the sea urchin Strongylocentrotus purpuratus based on transcriptome analysis. Tu Q, et al. Genome Res, 2012 Oct. PMID 22709795, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
exostosin-2-like

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Strongylocentrotus purpuratus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Spur_5.0 Primary Assembly

Genomic

  1. NW_022145602.1 Reference Spur_5.0 Primary Assembly

    Range
    15178729..15191232 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030987801.1 → XP_030843661.1  exostosin-2-like

    UniProtKB/TrEMBL
    A0A7M7NYQ5
    Conserved Domains (2) summary
    pfam03016
    Location:91 → 369
    Exostosin; Exostosin family
    pfam09258
    Location:443 → 684
    Glyco_transf_64; Glycosyl transferase family 64 domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases