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LOC115918089 probable C-mannosyltransferase DPY19L1 [ Strongylocentrotus purpuratus (purple sea urchin) ]

Gene ID: 115918089, updated on 14-Dec-2023

Summary

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Gene symbol
LOC115918089
Gene description
probable C-mannosyltransferase DPY19L1
Gene type
protein coding
RefSeq status
MODEL
Organism
Strongylocentrotus purpuratus
Lineage
Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Camarodonta; Echinidea; Strongylocentrotidae; Strongylocentrotus
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Genomic context

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See LOC115918089 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
22
Annotation release Status Assembly Chr Location
102 current Spur_5.0 (GCF_000002235.5) Unplaced Scaffold NW_022145604.1 (3430143..3466383, complement)

NW_022145604.1Genomic Context describing neighboring genes Neighboring gene sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1 Neighboring gene adhesion G-protein coupled receptor G2 Neighboring gene formin-like protein 13 Neighboring gene uncharacterized LOC115925963 Neighboring gene uncharacterized LOC105437804 Neighboring gene uncharacterized LOC100888963

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_022145604 Unplaced Scaffold Reference Spur_5.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene structure in the sea urchin Strongylocentrotus purpuratus based on transcriptome analysis. Tu Q, et al. Genome Res, 2012 Oct. PMID 22709795, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein C-linked glycosylation via 2'-alpha-mannosyl-L-tryptophan IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nuclear inner membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable C-mannosyltransferase DPY19L1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Strongylocentrotus purpuratus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Spur_5.0 Primary Assembly

Genomic

  1. NW_022145604.1 Reference Spur_5.0 Primary Assembly

    Range
    3430143..3466383 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030990765.1 → XP_030846625.1  probable C-mannosyltransferase DPY19L1

    UniProtKB/TrEMBL
    A0A7M7P6Q0
    Conserved Domains (1) summary
    pfam10034
    Location:52 → 732
    Dpy19; Q-cell neuroblast polarisation
Nucleotide Protein
Heading Accession and Version

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