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LOC115891494 zeta-sarcoglycan [ Sitophilus oryzae (rice weevil) ]

Gene ID: 115891494, updated on 10-May-2024

Summary

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Gene symbol
LOC115891494
Gene description
zeta-sarcoglycan
See related
EnsemblRapid:LOC115891494
Gene type
protein coding
RefSeq status
MODEL
Organism
Sitophilus oryzae
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Coleoptera; Polyphaga; Cucujiformia; Curculionidae; Dryophthorinae; Sitophilus
Orthologs
fruit fly all
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Genomic context

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See LOC115891494 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
100 current Soryzae_2.0 (GCF_002938485.1) Unplaced Scaffold NW_022145817.1 (2484769..2601734, complement)

NW_022145817.1Genomic Context describing neighboring genes Neighboring gene odorant receptor 49b-like Neighboring gene mitochondrial ribosomal protein L28 Neighboring gene piggyBac transposable element-derived protein 3-like Neighboring gene uncharacterized LOC115891496 Neighboring gene uncharacterized LOC115891418 Neighboring gene uncharacterized LOC115891419

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_022145817 Unplaced Scaffold Reference Soryzae_2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cardiac muscle tissue development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zeta-sarcoglycan

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sitophilus oryzae Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Soryzae_2.0 Primary Assembly

Genomic

  1. NW_022145817.1 Reference Soryzae_2.0 Primary Assembly

    Range
    2484769..2601734 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030911960.1 → XP_030767820.1  zeta-sarcoglycan

    UniProtKB/TrEMBL
    A0A6J2YX48
    Related
    XP_030767820.1, XM_030911960.1
    Conserved Domains (1) summary
    pfam04790
    Location:33 → 290
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  2. XM_030911959.1 → XP_030767819.1  zeta-sarcoglycan

    UniProtKB/TrEMBL
    A0A6J2YX48
    Related
    XP_030767819.1, XM_030911959.1
    Conserved Domains (1) summary
    pfam04790
    Location:33 → 290
    Sarcoglycan_1; Sarcoglycan complex subunit protein
Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases