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LOC115887117 aspartyl/asparaginyl beta-hydroxylase [ Sitophilus oryzae (rice weevil) ]

Gene ID: 115887117, updated on 10-May-2024

Summary

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Gene symbol
LOC115887117
Gene description
aspartyl/asparaginyl beta-hydroxylase
See related
EnsemblRapid:LOC115887117
Gene type
protein coding
RefSeq status
MODEL
Organism
Sitophilus oryzae
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Coleoptera; Polyphaga; Cucujiformia; Curculionidae; Dryophthorinae; Sitophilus
Orthologs
fruit fly all
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Genomic context

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See LOC115887117 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
100 current Soryzae_2.0 (GCF_002938485.1) Unplaced Scaffold NW_022147143.1 (826750..841229, complement)

NW_022147143.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 199 Neighboring gene biogenesis of lysosome-related organelles complex 1 subunit 5-like Neighboring gene cathepsin L-like proteinase Neighboring gene uncharacterized LOC115887178 Neighboring gene chitooligosaccharidolytic beta-N-acetylglucosaminidase

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_022147143 Unplaced Scaffold Reference Soryzae_2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables peptidyl-aspartic acid 3-dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in peptidyl-aspartic acid hydroxylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
aspartyl/asparaginyl beta-hydroxylase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sitophilus oryzae Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Soryzae_2.0 Primary Assembly

Genomic

  1. NW_022147143.1 Reference Soryzae_2.0 Primary Assembly

    Range
    826750..841229 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030906446.1 → XP_030762306.1  aspartyl/asparaginyl beta-hydroxylase isoform X3

    UniProtKB/TrEMBL
    A0A6J2YG83
    Related
    XP_030762306.1, XM_030906446.1
    Conserved Domains (3) summary
    COG0457
    Location:317 → 557
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:358 → 383
    TPR; TPR repeat [structural motif]
    pfam05118
    Location:529 → 681
    Asp_Arg_Hydrox; Aspartyl/Asparaginyl beta-hydroxylase

  2. XM_030906445.1 → XP_030762305.1  aspartyl/asparaginyl beta-hydroxylase isoform X2

    UniProtKB/TrEMBL
    A0A6J2YHE1
    Related
    XP_030762305.1, XM_030906445.1
    Conserved Domains (3) summary
    COG0457
    Location:462 → 634
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:503 → 528
    TPR; TPR repeat [structural motif]
    pfam05118
    Location:674 → 826
    Asp_Arg_Hydrox; Aspartyl/Asparaginyl beta-hydroxylase

  3. XM_030906444.1 → XP_030762304.1  aspartyl/asparaginyl beta-hydroxylase isoform X1

    UniProtKB/TrEMBL
    A0A6J2YGR7
    Related
    XP_030762304.1, XM_030906444.1
    Conserved Domains (3) summary
    COG0457
    Location:487 → 659
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:528 → 553
    TPR; TPR repeat [structural motif]
    pfam05118
    Location:699 → 851
    Asp_Arg_Hydrox; Aspartyl/Asparaginyl beta-hydroxylase
Nucleotide Protein
Heading Accession and Version

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