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Hcf Host cell factor [ Sitophilus oryzae (rice weevil) ]

Gene ID: 115882499, updated on 23-May-2024

Summary

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Gene symbol
Hcf
Gene description
Host cell factor
See related
EnsemblRapid:LOC115882499
Gene type
protein coding
RefSeq status
MODEL
Organism
Sitophilus oryzae
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Coleoptera; Polyphaga; Cucujiformia; Curculionidae; Dryophthorinae; Sitophilus
Orthologs
fruit fly all
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Genomic context

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See Hcf in Genome Data Viewer
Location:
chromosome: Un
Exon count:
14
Annotation release Status Assembly Chr Location
100 current Soryzae_2.0 (GCF_002938485.1) Unplaced Scaffold NW_022146479.1 (10189382..10198650)

NW_022146479.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC115882498 Neighboring gene uncharacterized LOC115882495 Neighboring gene protein RRNAD1 Neighboring gene uncharacterized LOC115882219 Neighboring gene uncharacterized LOC115882220

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_022146479 Unplaced Scaffold Reference Soryzae_2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription coactivator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin remodeling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of histone methyltransferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
host cell factor 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sitophilus oryzae Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Soryzae_2.0 Primary Assembly

Genomic

  1. NW_022146479.1 Reference Soryzae_2.0 Primary Assembly

    Range
    10189382..10198650
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030900581.1 → XP_030756441.1  host cell factor 2

    UniProtKB/TrEMBL
    A0A6J2XZG0
    Related
    XP_030756441.1, XM_030900581.1
    Conserved Domains (6) summary
    PLN02193
    Location:7 → 309
    PLN02193; nitrile-specifier protein
    COG5271
    Location:899 → 1043
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
    cd00063
    Location:1119 → 1148
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    sd00038
    Location:22 → 69
    Kelch; KELCH repeat [structural motif]
    pfam05109
    Location:392 → 809
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    pfam13854
    Location:306 → 337
    Kelch_5; Kelch motif
Nucleotide Protein
Heading Accession and Version

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