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WNT5A Wnt family member 5A [ Globicephala melas (long-finned pilot whale) ]

Gene ID: 115858990, updated on 17-Mar-2024

Summary

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Gene symbol
WNT5A
Gene description
Wnt family member 5A
See related
EnsemblRapid:ENSGMEG00000006248
Gene type
protein coding
RefSeq status
MODEL
Organism
Globicephala melas
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Delphinidae; Globicephala
Orthologs
human mouse all
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Genomic context

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See WNT5A in Genome Data Viewer
Location:
chromosome: 11
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2023_10 current mGloMel1.1 (GCF_963455315.1) 11 NC_083324.1 (57277635..57313986)
100 previous assembly ASM654740v1 (GCF_006547405.1) Unplaced Scaffold NW_022134884.1 (5998882..6027094, complement)

Chromosome 11 - NC_083324.1Genomic Context describing neighboring genes Neighboring gene ELKS/RAB6-interacting/CAST family member 2 Neighboring gene large ribosomal subunit protein uL22m-like Neighboring gene uncharacterized LOC115859133 Neighboring gene uncharacterized LOC115858995 Neighboring gene uncharacterized LOC132598148 Neighboring gene uncharacterized LOC115858989

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cytokine activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables frizzled binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in canonical Wnt signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell fate commitment IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in multicellular organism development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in neuron differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein Wnt-5a

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_963455315.1-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mGloMel1.1 Primary Assembly

Genomic

  1. NC_083324.1 Reference mGloMel1.1 Primary Assembly

    Range
    57277635..57313986
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_060307693.1 → XP_060163676.1  protein Wnt-5a isoform X1

  2. XM_030867449.2 → XP_030723309.2  protein Wnt-5a isoform X1

  3. XM_060307694.1 → XP_060163677.1  protein Wnt-5a isoform X1

  4. XM_030867451.2 → XP_030723311.1  protein Wnt-5a isoform X2

    Related
    ENSGMEP00000008621.1
    Conserved Domains (1) summary
    cd19347
    Location:69 → 380
    Wnt_Wnt5a; Wnt domain found in protein Wnt-5a and similar proteins

  5. XM_030867448.2 → XP_030723308.2  protein Wnt-5a isoform X3

  6. XM_030867452.2 → XP_030723312.1  protein Wnt-5a isoform X3

    Conserved Domains (1) summary
    cd19347
    Location:49 → 360
    Wnt_Wnt5a; Wnt domain found in protein Wnt-5a and similar proteins

RNA

  1. XR_009565783.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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