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ABO ABO, alpha 1-3-N-acetylgalactosaminyltransferase and alpha 1-3-galactosyltransferase [ Nomascus leucogenys (northern white-cheeked gibbon) ]

Gene ID: 115836398, updated on 17-Mar-2024

Summary

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Gene symbol
ABO
Gene description
ABO, alpha 1-3-N-acetylgalactosaminyltransferase and alpha 1-3-galactosyltransferase
See related
EnsemblRapid:ENSNLEG00000048561
Gene type
protein coding
RefSeq status
MODEL
Organism
Nomascus leucogenys
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hylobatidae; Nomascus
Orthologs
human mouse all
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Genomic context

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See ABO in Genome Data Viewer
Location:
chromosome: 8
Exon count:
7
Annotation release Status Assembly Chr Location
103 current Asia_NLE_v1 (GCF_006542625.1) 8 NC_044388.1 (109393425..109414021, complement)

Chromosome 8 - NC_044388.1Genomic Context describing neighboring genes Neighboring gene ral guanine nucleotide dissociation stimulator Neighboring gene globoside alpha-1,3-N-acetylgalactosaminyltransferase 1 (FORS blood group) Neighboring gene surfeit 6 Neighboring gene mediator complex subunit 22

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_044388.1 Chromosome 8 Reference Asia_NLE_v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycoprotein-fucosylgalactoside alpha-N-acetylgalactosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in lipid glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
histo-blood group ABO system transferase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nomascus leucogenys Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Asia_NLE_v1 Primary Assembly

Genomic

  1. NC_044388.1 Reference Asia_NLE_v1 Primary Assembly

    Range
    109393425..109414021 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030818106.1 → XP_030673966.1  histo-blood group ABO system transferase isoform X2

    Related
    ENSNLEP00000059081.1, ENSNLET00000062506.1
    Conserved Domains (1) summary
    pfam03414
    Location:37 → 353
    Glyco_transf_6; Glycosyltransferase family 6

  2. XM_030818104.1 → XP_030673964.1  histo-blood group ABO system transferase isoform X1

    Related
    ENSNLEP00000052081.1, ENSNLET00000062823.1
    Conserved Domains (1) summary
    pfam03414
    Location:83 → 368
    Glyco_transf_6; Glycosyltransferase family 6
Nucleotide Protein
Heading Accession and Version

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