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trappc4 trafficking protein particle complex subunit 4 [ Chanos chanos (milkfish) ]

Gene ID: 115813604, updated on 17-Mar-2024

Summary

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Gene symbol
trappc4
Gene description
trafficking protein particle complex subunit 4
Gene type
protein coding
RefSeq status
MODEL
Organism
Chanos chanos
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Gonorynchiformes; Chanidae; Chanos
Orthologs
human zebrafish all
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Genomic context

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See trappc4 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
5
Annotation release Status Assembly Chr Location
100 current fChaCha1.1 (GCF_902362185.1) 6 NC_044500.1 (8740965..8742774, complement)

Chromosome 6 - NC_044500.1Genomic Context describing neighboring genes Neighboring gene potassium channel subfamily K member 13-like Neighboring gene solute carrier family 37 member 4a Neighboring gene ribosomal protein S25 Neighboring gene sarcoglycan, gamma

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_044500.1 Chromosome 6 Reference fChaCha1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of TRAPP complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
trafficking protein particle complex subunit 4
Names
trafficking protein particle complex 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Chanos chanos Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fChaCha1.1 Primary Assembly

Genomic

  1. NC_044500.1 Reference fChaCha1.1 Primary Assembly

    Range
    8740965..8742774 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030776113.1 → XP_030631973.1  trafficking protein particle complex subunit 4 isoform X5

    UniProtKB/TrEMBL
    A0A6J2VJC6
    Conserved Domains (1) summary
    cl38905
    Location:4 → 112
    longin-like; Longin-like domains

  2. XM_030776111.1 → XP_030631971.1  trafficking protein particle complex subunit 4 isoform X3

    UniProtKB/TrEMBL
    A0A6J2VL12
    Conserved Domains (1) summary
    cd14856
    Location:4 → 162
    TRAPPC4_synbindin; Trafficking protein particle complex subunit 4

  3. XM_030776112.1 → XP_030631972.1  trafficking protein particle complex subunit 4 isoform X4

    UniProtKB/TrEMBL
    A0A6J2VJ72
    Conserved Domains (1) summary
    cd14856
    Location:4 → 158
    TRAPPC4_synbindin; Trafficking protein particle complex subunit 4

  4. XM_030776109.1 → XP_030631969.1  trafficking protein particle complex subunit 4 isoform X1

    UniProtKB/TrEMBL
    A0A6J2VJ04
    Conserved Domains (2) summary
    cd14856
    Location:4 → 205
    TRAPPC4_synbindin; Trafficking protein particle complex subunit 4
    cl00117
    Location:53 → 98
    PDZ; PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. ...

  5. XM_030776110.1 → XP_030631970.1  trafficking protein particle complex subunit 4 isoform X2

    UniProtKB/TrEMBL
    A0A6J2VG98
    Conserved Domains (2) summary
    cl38905
    Location:4 → 168
    longin-like; Longin-like domains
    cl00117
    Location:53 → 98
    PDZ; PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. ...
Nucleotide Protein
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